Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_N18
         (850 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161     38   0.013
01_01_0894 + 7047273-7048277,7049124-7049549                           36   0.054
07_03_0321 + 16757414-16757743                                         33   0.29 
07_01_1001 - 8460467-8460799                                           33   0.29 
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764...    31   1.2  
07_03_1231 + 25047067-25047262,25047876-25048045,25048897-250490...    28   8.2  
02_05_0960 + 33097510-33097821,33098846-33099043,33099174-330994...    28   8.2  
01_01_0094 - 730484-731570,732030-732715                               28   8.2  

>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
          Length = 113

 Score = 37.5 bits (83), Expect = 0.013
 Identities = 16/26 (61%), Positives = 21/26 (80%)
 Frame = +1

Query: 709 MRYVAAYLLAVLGGXTTPXAADVEKI 786
           M+ +AAYLLAVLGG T+P A D++ I
Sbjct: 1   MKLIAAYLLAVLGGNTSPSADDIKNI 26


>01_01_0894 + 7047273-7048277,7049124-7049549
          Length = 476

 Score = 35.5 bits (78), Expect = 0.054
 Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
 Frame = -2

Query: 288 GFRLPWPPSCCHERPTPFMVSHERFLGALTXRLVHPTA----PVLLTKIGPLGTVIRSPA 121
           G+RLP PPS    R  PF+  H   LG+L  R +   A    PV+L   G + TV+ S A
Sbjct: 43  GWRLPLPPS---PRGVPFL-GHLPLLGSLPHRKLRSMAEAHGPVMLLWFGRVPTVVASSA 98

Query: 120 SSFE*AGVLTHLKFENRLR 64
           +S + A       F +R R
Sbjct: 99  ASAQEAMRARDAAFASRAR 117


>07_03_0321 + 16757414-16757743
          Length = 109

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +1

Query: 709 MRYVAAYLLAVLGGXTTPXAADVEKI 786
           MR+VAAYL+A +GG  +P   DV  I
Sbjct: 1   MRFVAAYLMATIGGNASPTKDDVRAI 26


>07_01_1001 - 8460467-8460799
          Length = 110

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +1

Query: 709 MRYVAAYLLAVLGGXTTPXAADVEKI 786
           MR+VAAYL+A +GG  +P   DV  I
Sbjct: 1   MRFVAAYLMATIGGNASPTKDDVRAI 26


>02_04_0074 -
           19474786-19474812,19475174-19475400,19476362-19476496,
           19478662-19479193
          Length = 306

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 661 TLFFRHYTFRVIXT*--KMRYVAAYLLAVLGGXTTPXAADVEKI 786
           +LF   Y F +      +M++++AYLLA L G   P A D+  I
Sbjct: 176 SLFMLFYPFLIFFCDLLRMKFISAYLLATLAGNPNPSAEDLTTI 219


>07_03_1231 +
           25047067-25047262,25047876-25048045,25048897-25049030,
           25049122-25049369,25049799-25049904,25049992-25050130,
           25050258-25050385,25050472-25050733
          Length = 460

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -3

Query: 164 LPKLAHLAPSSDLRLHRSSKPEFSPI 87
           L  L +LAP  DLR+  SSKP F  I
Sbjct: 259 LETLVNLAPVLDLRIFSSSKPSFIKI 284


>02_05_0960 +
           33097510-33097821,33098846-33099043,33099174-33099446,
           33099575-33099677,33100297-33100415,33100968-33101759
          Length = 598

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 626 GVSYLLTFVQDERYSFGITRFVSLXLKKCVTW 721
           G + LLT+V  E+  F  T  VS     C+TW
Sbjct: 270 GTAALLTYVLREQQEFASTTCVSFAPAACMTW 301


>01_01_0094 - 730484-731570,732030-732715
          Length = 590

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 294 LSGFRLPWPPSCCHERPTPFMVSHERFLGALT 199
           + G +LP  P  C + P P +V   RF   LT
Sbjct: 552 VDGLQLPSRPFFCDDEPLPLLVDSYRFSSELT 583


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,818,761
Number of Sequences: 37544
Number of extensions: 455479
Number of successful extensions: 1046
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)