Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_N13
(895 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 33 0.055
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 32 0.13
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 28 2.1
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 27 2.7
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.6
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 27 3.6
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 4.8
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb... 26 6.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 6.3
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 33.1 bits (72), Expect = 0.055
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 554 SPLCIKPPSPGDLGYINPIIKFPD-SIHQPPQT 649
+PL PP PGD+ + NP++ PD + QP +T
Sbjct: 212 APLSGPPPQPGDIVFSNPMLGGPDHKVSQPSET 244
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 31.9 bits (69), Expect = 0.13
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 540 YYWRSRPYASSHPPLAISATSTRSSNSPIPYTNHPRL-NIHFP 665
YY RS P + S P +++ + S+NSP Y+N P L NI P
Sbjct: 129 YYHRS-PSSDSFSPGVVASVNPNSNNSPTFYSNPPALSNIPIP 170
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 549 RSRPYASSHPPLAISATSTRSSNSPIPYTNHPRL 650
RS P+ + P A+SAT + +SPI + +P+L
Sbjct: 97 RSPPFLAYTPKRAVSATLATTQSSPISTSFNPQL 130
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 27.5 bits (58), Expect = 2.7
Identities = 28/76 (36%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = +1
Query: 316 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 486
TG +T+ QSL N+S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 487 DVTVEGVNVLVTPSSS 534
DV+ E L TP S
Sbjct: 367 DVSDEEQRFLSTPLGS 382
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 298 RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 411
R+Y L T ++S + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 580 PWRSRLHQPDHQ-IPRFHTPTTPDLTSIFHQSLTP 681
P S QP HQ FHTPT P T + ++ +P
Sbjct: 123 PPNSLSSQPKHQEFHLFHTPTIPRTTQLSSKTSSP 157
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +1
Query: 379 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 468
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 530 PLALLLAVSPLCIKPPSPGDLGYINPIIKFPDSIHQ 637
P+A L V L + PP PGD Y + IK D IH+
Sbjct: 363 PVAGQLLVDML-VNPPKPGDPSY-DLFIKEVDEIHE 396
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 564 ASSHPPLAISATSTRSSNSPIPYTN 638
++S PP S +ST +S+SP+P T+
Sbjct: 312 STSTPPPPASTSSTGTSSSPLPSTS 336
Score = 26.2 bits (55), Expect = 6.3
Identities = 24/109 (22%), Positives = 39/109 (35%)
Frame = +1
Query: 316 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 495
T T S +T + +S+ Y + + + S P PVT C T+ V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 496 VEGVNVLVTPSSSRITIGGLALMHQATLPWRSRLHQPDHQIPRFHTPTT 642
V TP ++ ++ + +T P S + P TP T
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTST-PVTSSNYTISSSTPVTSTPVT 587
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,335,742
Number of Sequences: 5004
Number of extensions: 66169
Number of successful extensions: 217
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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