Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_N13
(895 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0157 + 2317965-2318321 31 1.2
07_03_0001 + 12219741-12219927,12219976-12220955 31 1.2
06_03_0141 - 17192151-17192166,17192305-17192630 31 1.2
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 30 2.2
08_01_0256 + 2102044-2102883,2104208-2104741,2104838-2104945 30 2.9
04_01_0029 + 372486-373426,373533-373938,374380-374832 30 2.9
03_05_0824 + 27980191-27980243,27980633-27980671,27980974-279820... 29 5.0
04_01_0041 - 464695-464850,467485-469029 29 6.6
09_01_0061 + 948663-948708,949638-949993 28 8.7
03_06_0648 + 35280492-35280645,35281742-35281820,35282491-352825... 28 8.7
03_05_0431 + 24221881-24224586 28 8.7
02_04_0486 - 23351960-23353093 28 8.7
02_04_0483 - 23305492-23306625 28 8.7
>09_01_0157 + 2317965-2318321
Length = 118
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +2
Query: 494 QLKESMCWSPLHPLALLLAVS--PLCIKPP 577
++K S CW+P+ P LL + +CI+PP
Sbjct: 19 KIKSSKCWNPIRPPTTLLTSNGCRICIRPP 48
>07_03_0001 + 12219741-12219927,12219976-12220955
Length = 388
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +2
Query: 494 QLKESMCWSPLHPLALLLAVS--PLCIKPP 577
++K S CW+P+ P LL + +CI+PP
Sbjct: 275 KIKSSKCWNPIRPPTTLLTSNGCRICIRPP 304
>06_03_0141 - 17192151-17192166,17192305-17192630
Length = 113
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +2
Query: 494 QLKESMCWSPLHPLALLLAVS--PLCIKPP 577
++K S CW+P+ P LL + +CI+PP
Sbjct: 19 KIKSSKCWNPIRPPTTLLTSNGCRICIRPP 48
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 30.3 bits (65), Expect = 2.2
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = +1
Query: 322 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 495
TE +N V V L SS GY D + ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 496 VEGVNVLVTPSSSRITIGGLALMHQ 570
+ +N+L+ P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>08_01_0256 + 2102044-2102883,2104208-2104741,2104838-2104945
Length = 493
Score = 29.9 bits (64), Expect = 2.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 555 RPYASSHPPLAISATSTRSSNSPIP 629
RP+ S PPL +AT+TR + P P
Sbjct: 33 RPHPSPPPPLLATATATRRDDEPAP 57
>04_01_0029 + 372486-373426,373533-373938,374380-374832
Length = 599
Score = 29.9 bits (64), Expect = 2.9
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = +2
Query: 404 LSILRLSFFLPPLA---SKYQSQLTFV-GLLLTSQLKESMCWSPLHPLALLLAVSPLCIK 571
LS+ + S PP A ++ Q ++ + GL + Q+K CW + L +L + + +K
Sbjct: 406 LSVEKTSMATPPQARRTTRRQGRMNKIRGLQMQEQIKNGQCWKQVQRLFSVLQMVSVIVK 465
Query: 572 PPSPGDLGYINPIIKFP 622
S +I+P FP
Sbjct: 466 FHS----SFIHPSCSFP 478
>03_05_0824 +
27980191-27980243,27980633-27980671,27980974-27982023,
27983097-27983262,27983439-27983549,27983637-27983688,
27984691-27984859,27985604-27985883
Length = 639
Score = 29.1 bits (62), Expect = 5.0
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = +1
Query: 439 PSLKIPVTVDL--CWTTADVTVEGVNVLVTPSSSRITIGGLALMHQATLPWRSR--LHQP 606
P KIP +++ C T+ D T + S+ +ITIG L L+ + WR R LH+P
Sbjct: 220 PGSKIPCNLEVSDCLTSHDGTSAS-----SSSNEKITIGLLFLLQKLCKNWRLRRFLHRP 274
Query: 607 DHQIPRFHTPTTPD 648
+I TP D
Sbjct: 275 -RRISNGTTPVFDD 287
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 283 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 459
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 460 TVD 468
+D
Sbjct: 100 PLD 102
>09_01_0061 + 948663-948708,949638-949993
Length = 133
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 67 LCLXSFLPRSAIPSLVNAFSSSKPPQTDNPSAR 165
LC+ + PS N +SS KPP T P+ R
Sbjct: 91 LCVIHVSSKDHRPSQDNPYSSDKPPPTSPPAQR 123
>03_06_0648 +
35280492-35280645,35281742-35281820,35282491-35282593,
35282695-35282815,35283144-35283232,35283324-35283473,
35285842-35287161
Length = 671
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +2
Query: 473 VGLLLTSQLKESMCWSPLHPLALLLAVSPLCIKPPSPGDLGYINPIIKFPDSIHQPP 643
VG + S+ ES CW L L + L P P G +PI + S+ PP
Sbjct: 245 VGRKVVSEAPESYCWLVLTKLGDSMIKQILGRFPKKPSKSGDKDPIGRSSPSVPNPP 301
>03_05_0431 + 24221881-24224586
Length = 901
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 509 MCWSPLHPLALLLAVSP-LCIKPP-SPGDLGYIN 604
MCW PLAL +AVSP +C+ S G Y N
Sbjct: 312 MCWGHSGPLALPMAVSPGICVSDSCSHGYYEYAN 345
>02_04_0486 - 23351960-23353093
Length = 377
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = +1
Query: 475 WTTADVTVEGVNVLVTPSSSRITIGGLALMHQATLPWRSRLHQPDHQIPRFHTPTTPDLT 654
W D VEG +L P S+ + GG L++ + ++ P + F P P
Sbjct: 172 WELTDFDVEGPQLLAAPISNPVLHGG--LLYVLGEDGKMAVYDPCNHDNNFTVPDKPKGF 229
Query: 655 SIFHQ 669
I HQ
Sbjct: 230 GIKHQ 234
>02_04_0483 - 23305492-23306625
Length = 377
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = +1
Query: 475 WTTADVTVEGVNVLVTPSSSRITIGGLALMHQATLPWRSRLHQPDHQIPRFHTPTTPDLT 654
W D VEG +L P S+ + GG L++ + ++ P + F P P
Sbjct: 172 WELTDFDVEGPQLLAAPISNPVLHGG--LLYVLGEDGKMAVYDPCNHDNNFTVPDKPKGF 229
Query: 655 SIFHQ 669
I HQ
Sbjct: 230 GIKHQ 234
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,577,615
Number of Sequences: 37544
Number of extensions: 508526
Number of successful extensions: 1270
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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