Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_N13
         (895 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.8  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   6.6  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   6.6  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   8.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   8.7  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 455 QSQLTFVGLLLTSQLKESMCWSPLHPLALL 544
           QS+ T   +L    +   +CW+P H   LL
Sbjct: 253 QSRKTITRMLSAVVITFFICWAPFHVQRLL 282


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 14/65 (21%), Positives = 28/65 (43%)
 Frame = +1

Query: 337  NSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVL 516
            + + V+    +++++ G R      ++ + F       +P TV  C T  DV     ++ 
Sbjct: 1163 DEMEVRKTSALTTVLTGLRKYTNYTIQVLAFTRVGD-GVPTTVTYCQTEEDVPGSPADIK 1221

Query: 517  VTPSS 531
            V  SS
Sbjct: 1222 VVVSS 1226


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 14/65 (21%), Positives = 28/65 (43%)
 Frame = +1

Query: 337  NSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVL 516
            + + V+    +++++ G R      ++ + F       +P TV  C T  DV     ++ 
Sbjct: 1159 DEMEVRKTSALTTVLTGLRKYTNYTIQVLAFTRVGD-GVPTTVTYCQTEEDVPGSPADIK 1217

Query: 517  VTPSS 531
            V  SS
Sbjct: 1218 VVVSS 1222


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 449 KYQSQLTFVGLLLTSQLKESMCWSPLHPLALL 544
           K  +Q   + +L+   +   +CW+P H   LL
Sbjct: 276 KSAAQRNVIRMLVAVVVAFFICWAPFHAQRLL 307


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 455 QSQLTFVGLLLTSQLKESMCWSPLHPLALL 544
           QS+ + + +L    +   +CW+P H   LL
Sbjct: 263 QSRKSVIKMLSAVVILFFICWAPFHTQRLL 292


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 509 MCWSPLHPLALLLAVSPLCIKP 574
           +CW P   + L+ A    CI P
Sbjct: 20  LCWLPFFTMYLVRAFCRNCIHP 41


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 509 MCWSPLHPLALLLAVSPLCIKP 574
           +CW P   + L+ A    CI P
Sbjct: 468 LCWLPFFTMYLVRAFCRNCIHP 489


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,094
Number of Sequences: 438
Number of extensions: 4819
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)