Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_N09
(802 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 64 1e-10
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 43 2e-04
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 42 4e-04
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 40 0.002
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 40 0.002
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 40 0.002
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 33 0.31
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 30 2.2
Z47067-3|CAA87330.2| 446|Caenorhabditis elegans Hypothetical pr... 29 2.9
U41110-4|AAA82419.1| 575|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF067944-4|AAC17670.2| 279|Caenorhabditis elegans Hypothetical ... 29 3.9
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 63.7 bits (148), Expect = 1e-10
Identities = 30/71 (42%), Positives = 47/71 (66%)
Frame = +3
Query: 132 LFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAG 311
++ D +KAFD++ H+ L+ KL ++ L++ + +FLSNRSFR R+ T S + T G
Sbjct: 17 IYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTLSSRKFATCG 76
Query: 312 VPQGSALSPXI 344
VPQG+ LSP +
Sbjct: 77 VPQGAVLSPLL 87
Score = 37.1 bits (82), Expect = 0.015
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +1
Query: 340 LLFSLYINDIPRSPETHLAL--FADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRID 513
LLF +Y+NDI +A FADDT +Y S K LQ A+ + W + ++
Sbjct: 86 LLFGIYVNDISSILPEKVACKQFADDTKLYASTPKTE-SENNLQSALDAVVDWTKGSKLT 144
Query: 514 INPTKSAAVLFKRGR 558
+N +K+ V + R
Sbjct: 145 LNQSKTVHVTVGKRR 159
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +3
Query: 150 KAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEG-TRSRPRQLTAGVPQGS 326
KAFD+V H+ L+ KL++ G+ DFLS+R+F +V +++GVP+GS
Sbjct: 2 KAFDQVNHSLLLQKLHDFGINPLFCNWFHDFLSSRTFSVKVNNHIDPNIHPISSGVPKGS 61
Query: 327 ALSPXI 344
P +
Sbjct: 62 VSGPFL 67
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 42.3 bits (95), Expect = 4e-04
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Frame = +3
Query: 66 VHRLTEHILIGLNRRKQIPTGALF--FDIAKAFDKVWHNGLIYKLYN-MGVPDRLVLIIR 236
V ++T I+ GLN K P A+ D+ AFDKV L L G+ ++ L +
Sbjct: 449 VIQVTNDIIGGLNM-KNPPERAIMACLDLRAAFDKVPTKKLCNDLMEAQGIEPKIKLWLG 507
Query: 237 DFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPXII*F 353
++L R R + S+ L GVPQGS +SP + F
Sbjct: 508 NYLHKRLIRTSHDNHWSKWHTLLGGVPQGSVISPNLFTF 546
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/68 (25%), Positives = 37/68 (54%)
Frame = +1
Query: 343 LFSLYINDIPRSPETHLALFADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINP 522
LF+ Y+ D+P +T L +ADD +I +K+ ++Q+ + + ++ ++ + I+
Sbjct: 543 LFTFYLKDMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAKYLKERGMSISA 602
Query: 523 TKSAAVLF 546
KS +F
Sbjct: 603 EKSTVTVF 610
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 40.3 bits (90), Expect = 0.002
Identities = 26/96 (27%), Positives = 42/96 (43%)
Frame = +3
Query: 57 VQQVHRLTEHILIGLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIR 236
+ +H L + +G R QIP +F D KAFD V H + L G + +++
Sbjct: 666 IDHIHSLQRLLEVG--REYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQGADGAYIDLLK 723
Query: 237 DFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPXI 344
+ N + + R +T GV QG +SP +
Sbjct: 724 ECYKNCTTNF-TPFHRPVAVPVTKGVRQGDPISPNL 758
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 40.3 bits (90), Expect = 0.002
Identities = 26/96 (27%), Positives = 42/96 (43%)
Frame = +3
Query: 57 VQQVHRLTEHILIGLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIR 236
+ +H L + +G R QIP +F D KAFD V H + L G + +++
Sbjct: 405 IDHIHSLQRLLEVG--REYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQGADGAYIDLLK 462
Query: 237 DFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPXI 344
+ N + + R +T GV QG +SP +
Sbjct: 463 ECYKNCTTNF-TPFHRPVAVPVTKGVRQGDPISPNL 497
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/96 (27%), Positives = 42/96 (43%)
Frame = +3
Query: 57 VQQVHRLTEHILIGLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIR 236
+ +H L + +G R QIP +F D KAFD V H + L G + +++
Sbjct: 495 IDHIHSLQRLLEVG--REYQIPLTLVFIDFKKAFDTVEHQAIWKSLDEQGADGAYIDLLK 552
Query: 237 DFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPXI 344
+ N + + R +T GV QG +SP +
Sbjct: 553 ECYKNCTTNF-TPFHRPVAVPVTKGVRQGDPISPNL 587
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 32.7 bits (71), Expect = 0.31
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = +3
Query: 132 LFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAG 311
+F D KAFD V H + L G + + ++++ N + + R +T G
Sbjct: 40 VFIDFKKAFDSVEHQAIWKSLDEQGADEAYIDLLKECYKNCTTNF-TPFLRPITVPVTKG 98
Query: 312 VPQGSALSPXI 344
V QG +SP +
Sbjct: 99 VRQGDPISPNL 109
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 189 KLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQ-LTAGVPQGSALSPXI 344
KL G+ ++FL NR+F ++ S+ +++GVPQGS P +
Sbjct: 839 KLAKFGLDSLTCSWYKEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLL 891
>Z47067-3|CAA87330.2| 446|Caenorhabditis elegans Hypothetical
protein C43C3.3 protein.
Length = 446
Score = 29.5 bits (63), Expect = 2.9
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Frame = +1
Query: 196 TTWECQTDSCSSYE-TSCRTVRFDIE*RELVLVPVN*P-----PESRKAPRSPRLLFSLY 357
TT TD S + T+ TV IE ELV P++ P P ++ P+ +
Sbjct: 317 TTRSAPTDDNGSLDLTNSLTVVSRIESAELVASPISQPTIVDTPSEQRRDPCPKSSNMGF 376
Query: 358 INDIPRSPETHLALFADDTAIYYSCRKMSL 447
I I L LF+ AIY+ C+ S+
Sbjct: 377 IPLIIMGSLASLLLFSAGAAIYFGCKLKSM 406
>U41110-4|AAA82419.1| 575|Caenorhabditis elegans Hypothetical
protein ZK682.5 protein.
Length = 575
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +3
Query: 21 TNSSDSAQNTRCVQQVHRLTEHILIGLNRRKQIPTGALFFDI 146
TNS S ++ V Q + LT ++ +GLN ++P GAL F +
Sbjct: 195 TNSLTSIPSSALVNQRNTLT-NLNLGLNSINEVPVGALDFPV 235
>AF067944-4|AAC17670.2| 279|Caenorhabditis elegans Hypothetical
protein K10C9.3 protein.
Length = 279
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +3
Query: 621 SHHSLWPAHSVGLEGQISRRHPRQXDDIPSHIKTVXXRXAXILGRLYP 764
S H LWP G Q R PR D+ + IK++ R + LYP
Sbjct: 58 SIHGLWPNFENGSYPQNCRGTPRHFDE--NLIKSIEDRLVVVWPNLYP 103
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,386,690
Number of Sequences: 27780
Number of extensions: 403180
Number of successful extensions: 1070
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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