Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_N08
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    29   0.89 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    28   2.1  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    26   6.3  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    26   6.3  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    26   8.3  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   8.3  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 208 VRVHRADTGRSSNELDRQTTXLERR 282
           +R H+   GR+  ELDR+ T L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
 Frame = +2

Query: 623 PXNRGXVEPPVGNG-XXMFXPXNPPPXXXXXRAXXXFPPGG 742
           P  R   +PP+GNG      P  PPP           PP G
Sbjct: 317 PSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQG 357


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 26  YYSCYPFLLTCAIASAAECENATSLSLMIDSLLATY 133
           +YSC P+LL   I  A+ C+  +  S +ID  L T+
Sbjct: 101 FYSCNPYLLFKGIC-ASSCQIDSYQSSLIDDALETF 135


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 277 VPXQSFVDPIHLKICQYPHGGL 212
           +P Q+F    H+++C YP GG+
Sbjct: 153 IPQQNFT---HVRLCMYPDGGI 171


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 132 YVARSESIMRDSDVAFSHSAALAIAQVRRNG 40
           Y    ES + D+ +  SH+ A +I Q  R+G
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSG 93


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 424 MKRLDISTPISMQLDNWPNDMQTCTFNFGSTMHN 525
           +KR DI    +   DNW ND+  C    G  +H+
Sbjct: 600 VKRYDIHRVFA---DNWINDISMCHMENGKVIHS 630


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 346 C*TRLQPPPGTTLSAPVYLITAPSPXMKRLDISTP 450
           C   L+PPP   + +  Y ++ PSP +    IS P
Sbjct: 149 CQPVLRPPPVPQVPSHWYPVSLPSPNLPHQPISKP 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,149,865
Number of Sequences: 5004
Number of extensions: 59028
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)