Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_N08
         (892 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0302 - 2021221-2023305                                           33   0.30 
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305...    29   3.8  
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182...    29   5.0  
07_01_0015 + 108338-109186                                             29   6.6  
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508...    29   6.6  
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707...    28   8.7  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   8.7  

>02_01_0302 - 2021221-2023305
          Length = 694

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
 Frame = -3

Query: 776 PKPTXGXTXXRXPPGETXXRPXXGXXPGAGXPXKTSXXHCQXEVPPXHGSWVXHPXWT-- 603
           P P+ G    + P G+    P     PGAG P  T   H     PP       HP  T  
Sbjct: 586 PSPSSGY---QPPSGQPGASPPTQHVPGAGTPTTTPPSHSHPSTPPSPSGPSFHPPPTPH 642

Query: 602 NPSHPTXXTRT 570
           N S P+  + T
Sbjct: 643 NCSPPSHGSST 653


>08_02_1291 +
           25930056-25930067,25930289-25930334,25930434-25930546,
           25930645-25930930,25931357-25931421,25931642-25931693,
           25931774-25931883,25932611-25932641,25932853-25933004,
           25934622-25934840
          Length = 361

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 223 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 134
           +GG  L    ++Q  G   Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129


>04_01_0159 -
           1824343-1824405,1824485-1824595,1825282-1825448,
           1825853-1826029,1826404-1826656
          Length = 256

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -3

Query: 395 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPFXLRSXSVVCRSNS 246
           T + S    GGCS    +   PP AFRG+  +   P       V CR+ S
Sbjct: 59  TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107


>07_01_0015 + 108338-109186
          Length = 282

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +1

Query: 364 PPPGTTLSAPVYLITAPSPXMKRLDISTPISMQLDNWPNDMQ 489
           PPP   L A      +PSP    L IS+P S   D+  N  Q
Sbjct: 110 PPPPPLLPAAAAAPDSPSPPSLLLQISSPKSTTADHHQNHQQ 151


>03_05_0176 +
           21546952-21547887,21548856-21548921,21549959-21550877,
           21551277-21551449,21551927-21552475
          Length = 880

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 33/125 (26%), Positives = 46/125 (36%), Gaps = 8/125 (6%)
 Frame = -2

Query: 399 IHGRGERSPRRWLQPR--------LAVPRQASTSVPRTPAKCCSPIXPAFQXSRLSIQFI 244
           IHG+G    RRW  P               A+ +     A   SPI P F     +   +
Sbjct: 410 IHGKGADMSRRWGNPMEMSADVDDAKTKTTATAAAAELTAMAISPI-PGFTGRGGAEASL 468

Query: 243 *RSASIRTVDSDSRMLACLKCRVRLTTILESGGDSRSYVARSESIMRDSDVAFSHSAALA 64
            RS +      DS  LA + C         SG  S S+   +    R + +A +  AAL 
Sbjct: 469 RRSLAAACASMDSSSLARILC--------SSGSSSSSHATLAARHFRPALLAAAEPAALV 520

Query: 63  IAQVR 49
           +  VR
Sbjct: 521 VRAVR 525


>07_03_0809 -
           21669632-21669637,21669871-21670131,21670573-21670752,
           21671458-21672819
          Length = 602

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 95  SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 250
           +L   +D L+  YD+  PPDS+ V        HA      + +R+L  + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 393 GRGERSPRRWLQPRLAVPRQASTSVPRTP 307
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,077,193
Number of Sequences: 37544
Number of extensions: 530664
Number of successful extensions: 1149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)