Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_N08
(892 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated io... 38 0.007
Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical pr... 38 0.010
Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical pr... 38 0.010
AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical ... 38 0.010
AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical ... 38 0.010
AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical ... 38 0.010
AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical ... 38 0.010
U64843-16|AAX55689.1| 442|Caenorhabditis elegans Modulation of ... 36 0.039
U64843-15|AAF98227.2| 489|Caenorhabditis elegans Modulation of ... 36 0.039
U64843-14|AAM45353.1| 475|Caenorhabditis elegans Modulation of ... 36 0.039
AF303088-1|AAG36975.1| 489|Caenorhabditis elegans serotonin-gat... 36 0.039
AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical... 34 0.12
Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical pr... 33 0.21
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 33 0.21
Z66500-2|CAA91304.2| 500|Caenorhabditis elegans Hypothetical pr... 33 0.36
L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte upt... 33 0.36
AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein. 33 0.36
Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical pr... 31 0.84
AF047656-7|AAC05108.2| 462|Caenorhabditis elegans Ligand-gated ... 31 0.84
AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated... 31 1.1
AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical ... 31 1.1
X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 31 1.5
X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 31 1.5
U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 31 1.5
AC006816-3|AAK85510.3| 508|Caenorhabditis elegans Hypothetical ... 31 1.5
Z99281-1|CAB16504.2| 439|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z70270-2|CAA94228.1| 445|Caenorhabditis elegans Hypothetical pr... 30 2.6
AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical ... 30 2.6
Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical pr... 29 3.4
X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit... 29 3.4
AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine... 29 3.4
AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine... 29 3.4
AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine... 29 3.4
Z82059-5|CAB04879.2| 408|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z67737-2|CAA91537.3| 400|Caenorhabditis elegans Hypothetical pr... 29 5.9
U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine r... 29 5.9
AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical ... 29 5.9
Z77656-4|CAH04701.1| 536|Caenorhabditis elegans Hypothetical pr... 28 7.8
U10401-10|AAA19062.2| 476|Caenorhabditis elegans Hypothetical p... 28 7.8
>U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated ion
channel protein 3 protein.
Length = 355
Score = 38.3 bits (85), Expect = 0.007
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Frame = +2
Query: 11 NVDDLYYSCYPFLLTCAIASAAECENAT-SLSLMIDSLLATYDRESPPDSKIVVNLTLHL 187
N+ + + + F+ T + A E S S + LL +++ SPPD ++ ++ + L
Sbjct: 40 NMQCSFLTIFIFITTVTVGVAEFSEQYQGSSSRLTRHLLEKHNKCSPPDGRVDISHNIEL 99
Query: 188 RHA-NIRESESTVRILADLQMNWIDKRLXWNAGXM-GLQH 301
H I E +++L + W D L W G++H
Sbjct: 100 VHIIGINELNQNMQVLVYIVQQWTDASLSWKVEEFRGIKH 139
>Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 37.9 bits (84), Expect = 0.010
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 107 MIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLXWNAG 283
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 284 XMG 292
G
Sbjct: 130 LFG 132
>Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 37.9 bits (84), Expect = 0.010
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 107 MIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLXWNAG 283
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 284 XMG 292
G
Sbjct: 130 LFG 132
>AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 37.9 bits (84), Expect = 0.010
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 107 MIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLXWNAG 283
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 284 XMG 292
G
Sbjct: 130 LFG 132
>AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 37.9 bits (84), Expect = 0.010
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 107 MIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLXWNAG 283
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 284 XMG 292
G
Sbjct: 130 LFG 132
>AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 37.9 bits (84), Expect = 0.010
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 107 MIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLXWNAG 283
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 284 XMG 292
G
Sbjct: 130 LFG 132
>AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 37.9 bits (84), Expect = 0.010
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 107 MIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLXWNAG 283
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 284 XMG 292
G
Sbjct: 130 LFG 132
>U64843-16|AAX55689.1| 442|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 1, isoform c protein.
Length = 442
Score = 35.9 bits (79), Expect = 0.039
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 430 RLDISTPISMQLDNWPNDMQTCTFNFGSTMHNSDE 534
RL + +P ++ L +P D QTC F S HNS+E
Sbjct: 152 RLSVKSPCNLDLRQFPFDTQTCILIFESYSHNSEE 186
>U64843-15|AAF98227.2| 489|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 1, isoform a protein.
Length = 489
Score = 35.9 bits (79), Expect = 0.039
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 430 RLDISTPISMQLDNWPNDMQTCTFNFGSTMHNSDE 534
RL + +P ++ L +P D QTC F S HNS+E
Sbjct: 152 RLSVKSPCNLDLRQFPFDTQTCILIFESYSHNSEE 186
>U64843-14|AAM45353.1| 475|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 1, isoform b protein.
Length = 475
Score = 35.9 bits (79), Expect = 0.039
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 430 RLDISTPISMQLDNWPNDMQTCTFNFGSTMHNSDE 534
RL + +P ++ L +P D QTC F S HNS+E
Sbjct: 152 RLSVKSPCNLDLRQFPFDTQTCILIFESYSHNSEE 186
>AF303088-1|AAG36975.1| 489|Caenorhabditis elegans serotonin-gated
chloride channel protein.
Length = 489
Score = 35.9 bits (79), Expect = 0.039
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 430 RLDISTPISMQLDNWPNDMQTCTFNFGSTMHNSDE 534
RL + +P ++ L +P D QTC F S HNS+E
Sbjct: 152 RLSVKSPCNLDLRQFPFDTQTCILIFESYSHNSEE 186
>AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical
protein Y105C5B.16 protein.
Length = 400
Score = 34.3 bits (75), Expect = 0.12
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +2
Query: 131 YDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLXWNA 280
YD E+P + L +L+ ++E + + ++ ++ W D RL WNA
Sbjct: 64 YDNEAPKRYNYTIFL-YYLKLVEVQEPQEKISVVMEIMEYWYDARLSWNA 112
>Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.1 protein.
Length = 399
Score = 33.5 bits (73), Expect = 0.21
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Frame = +2
Query: 110 IDSLLATYDRESP----PDSKIVVNLTL---HLRHANIRESESTVRILADLQMNWIDKRL 268
+ + A +D P PD+ N TL +L+ + E E V ++ +L W D RL
Sbjct: 50 VSPVYAWFDTSKPLGYDPDAPQRYNYTLFLYNLKLIQVNEPEEQVSVVLELMEYWYDPRL 109
Query: 269 XWNA 280
WNA
Sbjct: 110 SWNA 113
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 33.5 bits (73), Expect = 0.21
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Frame = +2
Query: 107 MIDSLLATYDRESPP--DSK--IVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLX 271
+I+ L++ Y RE P DS +VV+L + L+ N+ E E + + A L+ W D+ L
Sbjct: 25 LINDLMSGYVREERPTLDSSKPVVVSLGVFLQQIINLSEKEEQLEVNAWLKFQWRDENLR 84
Query: 272 W 274
W
Sbjct: 85 W 85
>Z66500-2|CAA91304.2| 500|Caenorhabditis elegans Hypothetical
protein T05C12.2 protein.
Length = 500
Score = 32.7 bits (71), Expect = 0.36
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +3
Query: 312 SSERLWRPDVVLLNAAATT-AGDYALRARVSNNGSV 416
+S +LWRPDV+L N+ + + Y+ R VS+NG V
Sbjct: 103 ASFKLWRPDVLLFNSVSESFDSTYSSRFIVSSNGDV 138
>L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte uptake
defective protein4 protein.
Length = 433
Score = 32.7 bits (71), Expect = 0.36
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 164 VVNLTLHLRHANIRESESTVRILADLQMNWIDKRLXWN 277
+V++ H+ H +I + E T+ + + M W D+ L W+
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWD 111
>AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein.
Length = 433
Score = 32.7 bits (71), Expect = 0.36
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 164 VVNLTLHLRHANIRESESTVRILADLQMNWIDKRLXWN 277
+V++ H+ H +I + E T+ + + M W D+ L W+
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWD 111
>Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.6 protein.
Length = 401
Score = 31.5 bits (68), Expect = 0.84
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 173 LTLHLRHANIRESESTVRILADLQMNWIDKRLXWNA 280
L +L+ ++E E V ++ +L W D RL WN+
Sbjct: 79 LLYYLKLVEVQEPEEKVSVVLELVEQWYDPRLSWNS 114
>AF047656-7|AAC05108.2| 462|Caenorhabditis elegans Ligand-gated ion
channel protein 6 protein.
Length = 462
Score = 31.5 bits (68), Expect = 0.84
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 439 ISTPISMQLDNWPNDMQTCTFNFGS 513
+S+P +++DN+P D+Q C + GS
Sbjct: 148 VSSPCPLEIDNFPYDVQKCNISMGS 172
>AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated
ion channel protein 1 protein.
Length = 371
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 146 PPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLXWN 277
PP +++ + + + L+ ++ E E V L D W D+RL WN
Sbjct: 51 PPITELKLTMAM-LKLVDVVEVEEKVTFLFDYLAEWTDQRLKWN 93
>AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical
protein Y45G5AL.2 protein.
Length = 404
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 146 PPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLXWNAGXM-GLQHL 304
PP +I + L++ ++ + E E L D + +W D RL W+ G+ H+
Sbjct: 79 PPRFEITIQLSM-MKLVEVVEPEEKATFLFDYRADWYDTRLSWDPEDYGGINHI 131
>X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Frame = +2
Query: 47 LLTCAIASAAECENATSLSLMIDSLLATYDRE----SPPDSKIVVNLTLHLRHA-NIRES 211
LL I+ E + D L+ Y+R + P+ + + L L L ++ E
Sbjct: 10 LLLFCISFIKLTEGNEDAKRLYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDVHEI 69
Query: 212 ESTVRILADLQMNWIDKRLXWN 277
+ + L+ WID++L W+
Sbjct: 70 DQIMTCSVWLKQTWIDRKLSWD 91
>X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Frame = +2
Query: 47 LLTCAIASAAECENATSLSLMIDSLLATYDRE----SPPDSKIVVNLTLHLRHA-NIRES 211
LL I+ E + D L+ Y+R + P+ + + L L L ++ E
Sbjct: 10 LLLFCISFIKLTEGNEDAKRLYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDVHEI 69
Query: 212 ESTVRILADLQMNWIDKRLXWN 277
+ + L+ WID++L W+
Sbjct: 70 DQIMTCSVWLKQTWIDRKLSWD 91
>U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated
protein 38 protein.
Length = 511
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Frame = +2
Query: 47 LLTCAIASAAECENATSLSLMIDSLLATYDRE----SPPDSKIVVNLTLHLRHA-NIRES 211
LL I+ E + D L+ Y+R + P+ + + L L L ++ E
Sbjct: 10 LLLFCISFIKLTEGNEDAKRLYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDVHEI 69
Query: 212 ESTVRILADLQMNWIDKRLXWN 277
+ + L+ WID++L W+
Sbjct: 70 DQIMTCSVWLKQTWIDRKLSWD 91
>AC006816-3|AAK85510.3| 508|Caenorhabditis elegans Hypothetical
protein Y71D11A.5 protein.
Length = 508
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 430 RLDISTPISMQLDNWPNDMQTCTFNFGSTMHNSDE 534
RL + P M L +P D TC+ F S +N+DE
Sbjct: 183 RLKLQGPCIMDLTKFPFDNVTCSLTFESFNYNTDE 217
>Z99281-1|CAB16504.2| 439|Caenorhabditis elegans Hypothetical
protein Y57G11C.2 protein.
Length = 439
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Frame = +2
Query: 38 YPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSK----IVVNLTLHLRHA-NI 202
+ F L + + E + T + D L+ YD P + +++N++++ +
Sbjct: 8 FVFYLAISWCNLLEVDGITVAEQLKDVLMEGYDSSIRPVNNERDILIINISMNTMSVLTL 67
Query: 203 RESESTVRILADLQMNWIDKRLXWN 277
+E T+ ++ + W D+ L WN
Sbjct: 68 DPAEETINFSSEFILQWKDEFLFWN 92
>Z70270-2|CAA94228.1| 445|Caenorhabditis elegans Hypothetical
protein C53D6.3 protein.
Length = 445
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 430 RLDISTPISMQLDNWPNDMQTCTFNFGSTMHNSDE 534
R+ + P S+ L N+P D+Q C+ + S +N E
Sbjct: 170 RVRVKGPCSLDLSNFPLDLQKCSLIYESFNYNRQE 204
>AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical
protein F15E6.2 protein.
Length = 445
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/79 (18%), Positives = 31/79 (39%)
Frame = +2
Query: 68 SAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQM 247
S C+ + + TY + +K+V ++ + + I E V++ +
Sbjct: 54 SCHSCQGGDRAWKLRTHIQTTYQNATDNKTKVVRVESVRINNVEIDERRQNVKVFGRFVL 113
Query: 248 NWIDKRLXWNAGXMGLQHL 304
+W D + W+ GL L
Sbjct: 114 SWNDTMVSWDKEQWGLSWL 132
>Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical
protein C35C5.5 protein.
Length = 531
Score = 29.5 bits (63), Expect = 3.4
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Frame = +2
Query: 44 FLLTCAIASAAECENATSLSLMIDSLLATYDRESPP----DSKIVVNLTLHL-RHANIRE 208
FLL I +S ++++LL Y++ P + V +L R ++ E
Sbjct: 11 FLLVIFILHIVTINANKHVSQLLENLLTDYNKAVRPVHNASDALKVKFGANLCRLIDVDE 70
Query: 209 SESTVRILADLQMNWIDKRLXWNAGXMG 292
+ L+M W DK+L WN G
Sbjct: 71 VNQVLTTSLWLEMQWYDKKLTWNPTDWG 98
>X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 498
Score = 29.5 bits (63), Expect = 3.4
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Frame = +2
Query: 47 LLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHA-----NIRES 211
L++CAI +A + L D L+ Y+ P + +T+HL+ A ++ E
Sbjct: 7 LISCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEK 65
Query: 212 ESTVRILADLQMNWIDKRLXWNAGXMG 292
V + A L W D L W+ G
Sbjct: 66 NQVVYVNAWLDYTWNDYNLVWDKAEYG 92
>AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine
receptor (57.1 kD)alternative variant 1 protein.
Length = 498
Score = 29.5 bits (63), Expect = 3.4
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Frame = +2
Query: 47 LLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHA-----NIRES 211
L++CAI +A + L D L+ Y+ P + +T+HL+ A ++ E
Sbjct: 7 LISCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEK 65
Query: 212 ESTVRILADLQMNWIDKRLXWNAGXMG 292
V + A L W D L W+ G
Sbjct: 66 NQVVYVNAWLDYTWNDYNLVWDKAEYG 92
>AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform b protein.
Length = 480
Score = 29.5 bits (63), Expect = 3.4
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Frame = +2
Query: 47 LLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHA-----NIRES 211
L++CAI +A + L D L+ Y+ P + +T+HL+ A ++ E
Sbjct: 7 LISCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEK 65
Query: 212 ESTVRILADLQMNWIDKRLXWNAGXMG 292
V + A L W D L W+ G
Sbjct: 66 NQVVYVNAWLDYTWNDYNLVWDKAEYG 92
>AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform a protein.
Length = 498
Score = 29.5 bits (63), Expect = 3.4
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Frame = +2
Query: 47 LLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHA-----NIRES 211
L++CAI +A + L D L+ Y+ P + +T+HL+ A ++ E
Sbjct: 7 LISCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEK 65
Query: 212 ESTVRILADLQMNWIDKRLXWNAGXMG 292
V + A L W D L W+ G
Sbjct: 66 NQVVYVNAWLDYTWNDYNLVWDKAEYG 92
>Z82059-5|CAB04879.2| 408|Caenorhabditis elegans Hypothetical
protein T27E9.9 protein.
Length = 408
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 430 RLDISTPISMQLDNWPNDMQTCTFNFGSTMHNSDE 534
R+ ++ P S L +P D Q C + S HN+D+
Sbjct: 171 RIKLTGPCSSTLRTFPIDQQRCMLFYESFTHNTDQ 205
>Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical
protein C33G3.3 protein.
Length = 409
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +2
Query: 83 ENATSLS-LMIDSLLATYDRESPPDSKIVVNLT-LHLRHANIRESESTVRILADLQMNWI 256
E+A L+ L I +A+ + +N L+H + E + I L+++W
Sbjct: 33 ESAKKLAKLNIPHAIASIPPNYLSQQPVTINFAQFTLQHFELNEHLKDISIHGYLELSWH 92
Query: 257 DKRLXWN 277
D RL WN
Sbjct: 93 DDRLMWN 99
>Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.5 protein.
Length = 401
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 173 LTLHLRHANIRESESTVRILADLQMNWIDKRLXWN 277
L +L+ ++E V ++ +L W D RL WN
Sbjct: 79 LLYYLKLVEVQEPAEKVSVVLELVERWYDPRLSWN 113
>Z67737-2|CAA91537.3| 400|Caenorhabditis elegans Hypothetical
protein T01H10.2 protein.
Length = 400
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 131 YDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLXWNA 280
YD ++P + L L+ + E V ++ ++ W D RL WNA
Sbjct: 64 YDPDAPKRYNYSIML-YSLKLVEVNEPAEKVAVVMEIMEYWYDIRLSWNA 112
>U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine
receptor protein 11 protein.
Length = 461
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 312 SSERLWRPDVVLLNAAA 362
SS+ +W+PDV+L N+AA
Sbjct: 105 SSDHIWKPDVLLYNSAA 121
>AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical
protein D2062.12 protein.
Length = 397
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 179 LHLRHAN-IRESESTVRILADLQMNWIDKRLXWN 277
LH+ H + I++ + +++ W+D+RL WN
Sbjct: 62 LHVDHIHDIQDEQGVLKMALTFTFTWMDERLMWN 95
>Z77656-4|CAH04701.1| 536|Caenorhabditis elegans Hypothetical
protein F07B10.5 protein.
Length = 536
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 430 RLDISTPISMQLDNWPNDMQTCTFNFGSTMHNSDE 534
R+ + M + +P D Q C GS ++SDE
Sbjct: 183 RITVKAKCQMDMSRYPLDKQACRLVIGSYAYSSDE 217
>U10401-10|AAA19062.2| 476|Caenorhabditis elegans Hypothetical
protein T20B12.9 protein.
Length = 476
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 430 RLDISTPISMQLDNWPNDMQTCTFNFGSTMHNSDE 534
RL++ TP S+ L +P D +C S N+DE
Sbjct: 135 RLNVKTPCSVNLKMFPFDSLSCEIVLESYSFNTDE 169
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,625,156
Number of Sequences: 27780
Number of extensions: 396113
Number of successful extensions: 1067
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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