Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_N07
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   198   6e-52
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   198   8e-52
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    26   8.0  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  198 bits (484), Expect = 6e-52
 Identities = 93/170 (54%), Positives = 125/170 (73%)
 Frame = +2

Query: 215 LENLTVPVSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRR 394
           + +L  P SK++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +R
Sbjct: 57  VRDLDRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKR 116

Query: 395 RFYKNWYKCXXKAFTKASXKWQDELGRKSIXKDFKXMIRYCSVVRVIAHTQMKLLKQRXK 574
           RFYKNW+K   KAFTK + K+ +    +SI ++ + + +YCSVVRV+AHTQ++      K
Sbjct: 117 RFYKNWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQK 174

Query: 575 KAHIMEIQLNXGTIEDKVKWAXKHLXXLSLFDSVFAQXEMIDCXGVXKGQ 724
           KAH+MEIQ+N G++ DKV+WA +H        S F Q EMID  GV +G+
Sbjct: 175 KAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGK 224



 Score =  102 bits (244), Expect = 8e-23
 Identities = 44/55 (80%), Positives = 48/55 (87%)
 Frame = +3

Query: 45  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH 209
           MSH KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTH 55


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  198 bits (483), Expect = 8e-52
 Identities = 92/170 (54%), Positives = 125/170 (73%)
 Frame = +2

Query: 215 LENLTVPVSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRR 394
           + +L  P SK++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +R
Sbjct: 57  VRDLDRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKR 116

Query: 395 RFYKNWYKCXXKAFTKASXKWQDELGRKSIXKDFKXMIRYCSVVRVIAHTQMKLLKQRXK 574
           RFYKNW+K   KAFTK + K+ +    +SI ++ + + +YCSVVRV+AHTQ++      K
Sbjct: 117 RFYKNWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQK 174

Query: 575 KAHIMEIQLNXGTIEDKVKWAXKHLXXLSLFDSVFAQXEMIDCXGVXKGQ 724
           KAH+MEIQ+N G++ DKV+WA +H        S F Q EMID  GV +G+
Sbjct: 175 KAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGK 224



 Score =  102 bits (244), Expect = 8e-23
 Identities = 44/55 (80%), Positives = 48/55 (87%)
 Frame = +3

Query: 45  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH 209
           MSH KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTH 55


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 400 LQKLVQMQXXGFH*SQ*XMAG*AWTQINXKRFQEXDPLL*CC-KSHCPHSNEAVKAATKE 576
           L KL+Q+        +  M+   +  I+ K+F+E D  L CC +SH    ++      ++
Sbjct: 284 LNKLIQLNSAFLDEFEAIMSDLNFEDIDEKKFEEIDLRLACCFESHFFAFSQHYPRYLEQ 343

Query: 577 GSHYGN 594
            + +GN
Sbjct: 344 SNDFGN 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,220,725
Number of Sequences: 5004
Number of extensions: 60611
Number of successful extensions: 131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)