Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_N07
(871 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 188 5e-48
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 186 2e-47
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 31 1.2
02_01_0258 - 1709672-1709752,1710277-1710460,1710627-1710841,171... 30 2.8
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847... 29 6.4
09_01_0170 - 2459344-2459493,2459720-2459784,2459905-2459963,246... 28 8.5
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 188 bits (458), Expect = 5e-48
Identities = 92/180 (51%), Positives = 122/180 (67%), Gaps = 1/180 (0%)
Frame = +2
Query: 233 PVSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNW 412
P SK++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW
Sbjct: 63 PGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNW 122
Query: 413 YKCXXKAFTKASXKWQDELGRKSIXKDFKXMIRYCSVVRVIAHTQMKLLK-QRXKKAHIM 589
K KAFTK + K+ + G+K I + M +Y S+VRVIAHTQ++ +K + KKAH+M
Sbjct: 123 CKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLM 182
Query: 590 EIQLNXGTIEDKVKWAXKHLXXLSLFDSVFAQXEMIDCXGVXKGQRIQRCXFSFGXPXKP 769
EIQ+N GTI DKV + K D+VF + EMID GV KG+ + +G P
Sbjct: 183 EIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 242
Score = 105 bits (251), Expect = 6e-23
Identities = 44/55 (80%), Positives = 49/55 (89%)
Frame = +3
Query: 45 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH 209
MSHRKF PRHGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTH 55
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 186 bits (454), Expect = 2e-47
Identities = 92/180 (51%), Positives = 121/180 (67%), Gaps = 1/180 (0%)
Frame = +2
Query: 233 PVSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNW 412
P SK++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW
Sbjct: 63 PGSKLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNW 122
Query: 413 YKCXXKAFTKASXKWQDELGRKSIXKDFKXMIRYCSVVRVIAHTQMKLLK-QRXKKAHIM 589
K KAFTK + K+ + G+K I + M +Y SVVRVI HTQ++ +K + KKAH+M
Sbjct: 123 CKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAHLM 182
Query: 590 EIQLNXGTIEDKVKWAXKHLXXLSLFDSVFAQXEMIDCXGVXKGQRIQRCXFSFGXPXKP 769
EIQ+N GTI DKV + K D+VF + EMID GV KG+ + +G P
Sbjct: 183 EIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 242
Score = 103 bits (248), Expect = 1e-22
Identities = 43/55 (78%), Positives = 49/55 (89%)
Frame = +3
Query: 45 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH 209
MSHRKF PRHGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTH 55
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 24 SLRLSSSMSHRKFSAPRHGSM-GFYPKKRSRRHRGKVKAFPKDDPSKPVHLT 176
S+ S+S+ H + P+ S+ G P +++ + KVK K P VH+T
Sbjct: 233 SMEPSTSLEHSESPPPKRKSLDGRTPASSTKKGKKKVKFVDKKHPENAVHIT 284
>02_01_0258 -
1709672-1709752,1710277-1710460,1710627-1710841,
1711321-1711390,1711525-1711607,1711720-1711884,
1712068-1712172,1713021-1713140,1713620-1713718,
1713790-1713885,1714367-1714480,1715265-1715372,
1716200-1716264,1716430-1716609,1716747-1717397,
1717497-1717565,1717639-1717858
Length = 874
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 392 RRFYKNWYKCXXKAFTKASXKWQDELGRKSIXKDFKXMIRYC 517
RRF + KC K + + ++ +LGR + K+F +IR C
Sbjct: 163 RRFTRLMQKCADKLGAEPALEFFGKLGRDTGAKEFNALIRIC 204
>01_06_0083 +
26283492-26283756,26284255-26284467,26284620-26284771,
26284884-26285157,26285277-26285485
Length = 370
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 481 NXKRFQEXDPLL*CCKSHCPHSNEAVKAATKEGSHYGNP 597
N +RF DPLL CC H P+ A + + +G+P
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGA--TCDRTATVWGDP 333
>09_01_0170 -
2459344-2459493,2459720-2459784,2459905-2459963,
2460441-2460487,2460793-2460894,2461810-2461935,
2462035-2462169,2463396-2463512,2463583-2463714
Length = 310
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 215 LENLTVPVSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALL 355
LE V +S KK + EAV + + VGVV ++ P + L+
Sbjct: 32 LEGAAVVISSRKKKNVDEAVVGLRAKGITVVGVVCHVSIPEQRKNLI 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,656,108
Number of Sequences: 37544
Number of extensions: 426904
Number of successful extensions: 886
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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