Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_N07
(871 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 227 8e-60
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 227 8e-60
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 227 8e-60
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 227 8e-60
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 159 2e-39
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 159 2e-39
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 128 5e-30
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 128 5e-30
AF003146-5|AAB54199.1| 299|Caenorhabditis elegans Hypothetical ... 30 1.9
AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal ne... 28 10.0
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 227 bits (555), Expect = 8e-60
Identities = 103/163 (63%), Positives = 125/163 (76%)
Frame = +2
Query: 233 PVSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNW 412
P SK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY NW
Sbjct: 63 PGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNW 122
Query: 413 YKCXXKAFTKASXKWQDELGRKSIXKDFKXMIRYCSVVRVIAHTQMKLLKQRXKKAHIME 592
K KAFTK + KWQDE G+K I DF + +YCS +RVIAHTQMK+L++R KKAH++E
Sbjct: 123 AKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVE 182
Query: 593 IQLNXGTIEDKVKWAXKHLXXLSLFDSVFAQXEMIDCXGVXKG 721
IQ+N GTIE KV WA +HL D+VFAQ EMID GV +G
Sbjct: 183 IQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRG 225
Score = 109 bits (261), Expect = 3e-24
Identities = 46/55 (83%), Positives = 51/55 (92%)
Frame = +3
Query: 45 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH 209
MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTH 55
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 227 bits (555), Expect = 8e-60
Identities = 103/163 (63%), Positives = 125/163 (76%)
Frame = +2
Query: 233 PVSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNW 412
P SK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY NW
Sbjct: 63 PGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNW 122
Query: 413 YKCXXKAFTKASXKWQDELGRKSIXKDFKXMIRYCSVVRVIAHTQMKLLKQRXKKAHIME 592
K KAFTK + KWQDE G+K I DF + +YCS +RVIAHTQMK+L++R KKAH++E
Sbjct: 123 AKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVE 182
Query: 593 IQLNXGTIEDKVKWAXKHLXXLSLFDSVFAQXEMIDCXGVXKG 721
IQ+N GTIE KV WA +HL D+VFAQ EMID GV +G
Sbjct: 183 IQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRG 225
Score = 109 bits (261), Expect = 3e-24
Identities = 46/55 (83%), Positives = 51/55 (92%)
Frame = +3
Query: 45 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH 209
MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTH 55
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 227 bits (555), Expect = 8e-60
Identities = 103/163 (63%), Positives = 125/163 (76%)
Frame = +2
Query: 233 PVSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNW 412
P SK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY NW
Sbjct: 63 PGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNW 122
Query: 413 YKCXXKAFTKASXKWQDELGRKSIXKDFKXMIRYCSVVRVIAHTQMKLLKQRXKKAHIME 592
K KAFTK + KWQDE G+K I DF + +YCS +RVIAHTQMK+L++R KKAH++E
Sbjct: 123 AKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVE 182
Query: 593 IQLNXGTIEDKVKWAXKHLXXLSLFDSVFAQXEMIDCXGVXKG 721
IQ+N GTIE KV WA +HL D+VFAQ EMID GV +G
Sbjct: 183 IQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRG 225
Score = 109 bits (261), Expect = 3e-24
Identities = 46/55 (83%), Positives = 51/55 (92%)
Frame = +3
Query: 45 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH 209
MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTH 55
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 227 bits (555), Expect = 8e-60
Identities = 103/163 (63%), Positives = 125/163 (76%)
Frame = +2
Query: 233 PVSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNW 412
P SK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY NW
Sbjct: 63 PGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNW 122
Query: 413 YKCXXKAFTKASXKWQDELGRKSIXKDFKXMIRYCSVVRVIAHTQMKLLKQRXKKAHIME 592
K KAFTK + KWQDE G+K I DF + +YCS +RVIAHTQMK+L++R KKAH++E
Sbjct: 123 AKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVE 182
Query: 593 IQLNXGTIEDKVKWAXKHLXXLSLFDSVFAQXEMIDCXGVXKG 721
IQ+N GTIE KV WA +HL D+VFAQ EMID GV +G
Sbjct: 183 IQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRG 225
Score = 109 bits (261), Expect = 3e-24
Identities = 46/55 (83%), Positives = 51/55 (92%)
Frame = +3
Query: 45 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH 209
MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTH 55
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 159 bits (386), Expect = 2e-39
Identities = 70/106 (66%), Positives = 83/106 (78%)
Frame = +2
Query: 233 PVSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNW 412
P SK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY NW
Sbjct: 63 PGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNW 122
Query: 413 YKCXXKAFTKASXKWQDELGRKSIXKDFKXMIRYCSVVRVIAHTQM 550
K KAFTK + KWQDE G+K I DF + +YCS +RVIAHTQM
Sbjct: 123 AKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
Score = 109 bits (261), Expect = 3e-24
Identities = 46/55 (83%), Positives = 51/55 (92%)
Frame = +3
Query: 45 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH 209
MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTH 55
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 159 bits (386), Expect = 2e-39
Identities = 70/106 (66%), Positives = 83/106 (78%)
Frame = +2
Query: 233 PVSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNW 412
P SK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY NW
Sbjct: 63 PGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNW 122
Query: 413 YKCXXKAFTKASXKWQDELGRKSIXKDFKXMIRYCSVVRVIAHTQM 550
K KAFTK + KWQDE G+K I DF + +YCS +RVIAHTQM
Sbjct: 123 AKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
Score = 109 bits (261), Expect = 3e-24
Identities = 46/55 (83%), Positives = 51/55 (92%)
Frame = +3
Query: 45 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH 209
MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTH 55
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 128 bits (309), Expect = 5e-30
Identities = 60/103 (58%), Positives = 75/103 (72%)
Frame = +2
Query: 413 YKCXXKAFTKASXKWQDELGRKSIXKDFKXMIRYCSVVRVIAHTQMKLLKQRXKKAHIME 592
Y+ KAFTK + KWQDE G+K I DF + +YCS +RVIAHTQMK+L++R KKAH++E
Sbjct: 25 YRGRIKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVE 84
Query: 593 IQLNXGTIEDKVKWAXKHLXXLSLFDSVFAQXEMIDCXGVXKG 721
IQ+N GTIE KV WA +HL D+VFAQ EMID GV +G
Sbjct: 85 IQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRG 127
Score = 63.7 bits (148), Expect = 2e-10
Identities = 27/34 (79%), Positives = 30/34 (88%)
Frame = +3
Query: 45 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPK 146
MSHRKFSAPRHG MGF PKKRSR +RG++KAF K
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 128 bits (309), Expect = 5e-30
Identities = 60/103 (58%), Positives = 75/103 (72%)
Frame = +2
Query: 413 YKCXXKAFTKASXKWQDELGRKSIXKDFKXMIRYCSVVRVIAHTQMKLLKQRXKKAHIME 592
Y+ KAFTK + KWQDE G+K I DF + +YCS +RVIAHTQMK+L++R KKAH++E
Sbjct: 25 YRGRIKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVE 84
Query: 593 IQLNXGTIEDKVKWAXKHLXXLSLFDSVFAQXEMIDCXGVXKG 721
IQ+N GTIE KV WA +HL D+VFAQ EMID GV +G
Sbjct: 85 IQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRG 127
Score = 63.7 bits (148), Expect = 2e-10
Identities = 27/34 (79%), Positives = 30/34 (88%)
Frame = +3
Query: 45 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPK 146
MSHRKFSAPRHG MGF PKKRSR +RG++KAF K
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
>AF003146-5|AAB54199.1| 299|Caenorhabditis elegans Hypothetical
protein F56F4.2 protein.
Length = 299
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 287 TPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWY 415
T P + GY++ G+R VW E S+ + KNW+
Sbjct: 201 TDPNGYFDIAGYVDQSSGVRGRFWVWHECFSQKYHKDPCKNWF 243
>AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal
neurexin-like protein 1 protein.
Length = 1655
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +1
Query: 268 GCHHHRDSSDGLCRCCWIH*DPSWTTRSFDCLGGAYV*RLSTSLLQKLVQMQXXGF 435
GC + G C W + DPS T + DC +Y ++ L + V M+ GF
Sbjct: 1160 GCSSITCLNGGHCSVAWANTDPSAATTTCDCSRTSYT--GASCSLDEGVHMERSGF 1213
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,078,660
Number of Sequences: 27780
Number of extensions: 360060
Number of successful extensions: 804
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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