Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_N03
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    29   0.60 
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   5.6  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    26   5.6  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    26   7.4  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 213 VRVHRANTGRSSNELDRQTTXLERR 287
           +R H+ + GR+  ELDR+ T L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 137 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 39
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 17/54 (31%), Positives = 19/54 (35%)
 Frame = +2

Query: 650 PPGNVPXCFSGXPAPXQXAGXPGPCLAVVXXRSCXSTXXPXPPAXXPPXIPXLP 811
           PP + P   S  P P   +  P P  A     S      P  P   PP  P LP
Sbjct: 139 PPTSAPPRPS-IPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLP 191


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 17/57 (29%), Positives = 20/57 (35%), Gaps = 5/57 (8%)
 Frame = +2

Query: 647 APPGNVPXCFSGXPAPXQXAGX-----PGPCLAVVXXRSCXSTXXPXPPAXXPPXIP 802
           APP   P  +S   AP   A       P P  A    R+  +   P PP    P  P
Sbjct: 57  APPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYPPQGGYPQQP 113


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 391 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFXFGSRMHN 528
           RA +++   +  +KR DI    +   DNW ND+  C    G  +H+
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIHS 630


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,812,357
Number of Sequences: 5004
Number of extensions: 52485
Number of successful extensions: 145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)