Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_N03
         (816 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1747 + 29188568-29188715,29188793-29189541                       30   1.9  
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029...    30   2.5  
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600...    29   5.8  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   7.7  

>07_03_1747 + 29188568-29188715,29188793-29189541
          Length = 298

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +2

Query: 368 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSXSVLG 520
           PPP TT++  V L TA +   S   +  QF+C+     TTC  + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260


>05_03_0366 -
           13102147-13102281,13102560-13102739,13102791-13102992,
           13104385-13104575
          Length = 235

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -1

Query: 315 HQPSAAAPLPCVPXQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVRG 151
           H P AAA  P VP +    P  L +   S GG GL   S S +  G  + D G+ G
Sbjct: 7   HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61


>10_08_0141 +
           15159160-15159306,15159708-15159815,15159958-15160006,
           15160067-15160182,15160358-15160399,15161026-15161442,
           15162356-15162509,15162911-15162975,15163793-15163870,
           15163951-15164061,15164227-15164271,15164677-15164850,
           15165383-15166335,15166471-15166681,15167037-15167196,
           15168786-15169174
          Length = 1072

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 255 IHLKICLYSHGGLGLTNVSMSQMQGQVDYDFG--VRGGVPIVRCEERVDHE 109
           IHLK   Y++  L        Q +  +  + G  VRG VP++    R+DH+
Sbjct: 596 IHLKSDGYTNYSLETVQAGKQQCKAALQKELGLPVRGDVPVIAFIGRLDHQ 646


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 397 GRGERSPRRWLQPRLAVPRQASTSVPRTP 311
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,958,255
Number of Sequences: 37544
Number of extensions: 514395
Number of successful extensions: 1540
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1536
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)