Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_M24
(848 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 243 2e-64
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 241 7e-64
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.16
03_05_0366 - 23505755-23506441 33 0.38
08_02_1278 - 25838146-25839411 32 0.66
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 30 2.7
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 30 2.7
04_01_0588 + 7657510-7657992,7658397-7658843 29 6.2
02_04_0457 + 23093020-23093343,23093798-23093806 29 6.2
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 243 bits (594), Expect = 2e-64
Identities = 115/202 (56%), Positives = 139/202 (68%), Gaps = 1/202 (0%)
Frame = +1
Query: 178 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 357
VF+AP+RPD+V VH +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR
Sbjct: 31 VFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHR 90
Query: 358 SGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEK 537
+GQGAFGNMCRGGRMFAPTK WR+WH ARGH IE
Sbjct: 91 AGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIET 150
Query: 538 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKG 717
+PELPLV++D + I KT QA+ L+++ A++D K S +R GKGKMRNRR I RKG
Sbjct: 151 VPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKG 210
Query: 718 PLIIFNKD-QGLTRAFRNXPGV 780
PLI++ + + +AFRN PGV
Sbjct: 211 PLIVYGTEGSKIVKAFRNLPGV 232
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 241 bits (589), Expect = 7e-64
Identities = 120/214 (56%), Positives = 143/214 (66%), Gaps = 1/214 (0%)
Frame = +1
Query: 142 DGAGXQPSPSRFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVA 321
D AG Q P V +APIRPD+V H +S N RQPY VS+ AGHQTSAESWGTGRAV+
Sbjct: 21 DSAGIQ-MPQ--VLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGRAVS 77
Query: 322 RIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXX 501
RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 78 RIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAVP 137
Query: 502 XXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKG 681
ARGH IE +PE PLVV+D ++ I KT Q++ L+++ A++D K S +RAGKG
Sbjct: 138 SLVLARGHRIEGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKG 197
Query: 682 KMRNRRRIQRKGPLIIFNKD-QGLTRAFRNXPGV 780
KMRNRR I RKGPLI++ + + +AFRN PGV
Sbjct: 198 KMRNRRYINRKGPLIVYGTEGSKVVKAFRNLPGV 231
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.16
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +1
Query: 289 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 399
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>03_05_0366 - 23505755-23506441
Length = 228
Score = 32.7 bits (71), Expect = 0.38
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Frame = +1
Query: 130 REE*DGAGXQPSP---SRFVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAES 297
R+ G+G + P ++ AP D +V S + R P C S E + +AES
Sbjct: 90 RQRQGGSGWERHPWPHDSWIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAES 149
Query: 298 WGTGRAVARIPRVRGGGTHRSGQGA 372
TG A R R+ G T+ + + A
Sbjct: 150 GATGLAHTRAGRIHAGPTNDNDEEA 174
>08_02_1278 - 25838146-25839411
Length = 421
Score = 31.9 bits (69), Expect = 0.66
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -3
Query: 618 APQEDDSLFGLVDLLDFVGYNQGKLGNLFNNVSSSL 511
A +E LF L+D+LD V +G+L LF+ S++L
Sbjct: 89 AAREPQRLFRLLDMLDAVARERGRLDELFSGESATL 124
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 394 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 287
HH + H + YE+ + H + RQ QY QH
Sbjct: 150 HHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQH 185
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = -2
Query: 367 PDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 266
P + +HHHGH + Q H G PP
Sbjct: 33 PQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPP 66
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -2
Query: 364 DRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 266
D +HHH H G H Q QH PP
Sbjct: 32 DPQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPP 64
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +1
Query: 211 NDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGN 381
+D+ ++ SR + + ++S+ W G R+ + GGG R G
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260
Query: 382 MCRGGRMFAPTKPWRRW 432
P PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +1
Query: 274 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 378
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,181,626
Number of Sequences: 37544
Number of extensions: 486521
Number of successful extensions: 1611
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1601
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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