Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_M23
         (871 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0119 - 18169729-18169887,18170515-18170653,18170728-181709...    32   0.69 
01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999...    32   0.69 
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764           29   6.4  
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742...    29   6.4  
06_03_0107 + 16709543-16709640,16712555-16713408,16715051-167151...    28   8.5  
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384...    28   8.5  

>05_04_0119 -
           18169729-18169887,18170515-18170653,18170728-18170974,
           18171585-18171968,18172251-18172540,18172884-18173295,
           18173409-18173420,18173943-18174135
          Length = 611

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 240 LISDAHEWINEIPTFARSSLKNHYFHCFITYSVGRKRCAVDNI 368
           LI   H+W     T+ R+    H FH F  Y   ++ C++++I
Sbjct: 506 LIGSYHDWCEPFSTYPRTYDLLHAFHIFSHYQSRKEDCSLEDI 548


>01_06_0116 -
           26595570-26596607,26596964-26598353,26599386-26599923,
           26600562-26601453
          Length = 1285

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -2

Query: 495 PPQSNSPPGSVLEPDHAGVLNG-DERFRHVT--TXHAWNETPCARRYYRPRTASAQ 337
           PP +    GS  +   +G L+   ER RH +  T HA  E P   R  RPRT+S +
Sbjct: 450 PPSAREQRGSADKSSGSGRLDALVERMRHGSKLTDHAKREIPYDERNIRPRTSSGR 505


>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
          Length = 640

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 408 TTXHAWNETPCARRYY 361
           TT  AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575


>01_06_1406 -
           37073548-37073822,37073892-37074111,37074200-37074246,
           37074404-37074576,37075161-37075238,37075751-37075813,
           37075889-37075961,37076150-37076189,37076302-37076368,
           37076719-37078472,37079128-37079230,37080041-37080078,
           37080221-37080347,37081944-37082152
          Length = 1088

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 416 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 505
           +KR  P K PA S S+ LPG + + G  SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368


>06_03_0107 +
           16709543-16709640,16712555-16713408,16715051-16715193,
           16715312-16715573,16715835-16716150,16716257-16716383,
           16717088-16717149,16717291-16717374,16717438-16717494,
           16717705-16717768,16718057-16718152
          Length = 720

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +3

Query: 165 KKFKQARVNGGSNYDSLKVAKCLAHLISDAHEWINEIPTFARSSLKNHYFHCFIT 329
           + F + R   G  Y + + A     L+ D  EW N +   A+ +L +     F+T
Sbjct: 159 RSFAEIRTISGHEYPTFRAACEALGLLGDDQEWSNALKDAAQWALPSQLRQLFVT 213


>03_02_0740 -
           10836752-10837052,10837756-10837814,10837901-10838476,
           10839965-10841686,10841776-10842173,10842264-10842318,
           10842989-10843048,10843444-10843540,10844885-10844955,
           10845029-10845109,10846054-10846124,10847951-10848119,
           10848521-10848683,10848752-10848942,10849037-10849168
          Length = 1381

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 495 PPQSNSPPGSVLEPDHAGVLNGDE 424
           P  +NS P +V +PD   +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,367,713
Number of Sequences: 37544
Number of extensions: 440677
Number of successful extensions: 1201
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)