Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_M22
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.81 
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    29   0.81 
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    29   1.1  
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    27   2.5  
SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual    27   3.3  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    27   4.3  
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    26   7.6  

>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 14/39 (35%), Positives = 15/39 (38%)
 Frame = -3

Query: 692 PPLXGRLXSPXVXGXXXXXXXGPQGGVPGENARRXEGDG 576
           PP  G L  P + G       GP GG  G    R  G G
Sbjct: 100 PPPRGPLFGPRIGGGHHGPLHGPHGGFGGRGGGRMGGRG 138


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 405 PNVGGPDAVVRRLYVGVVRSMALYGAPVWC 494
           PN+GG    +R+  VGV+  MA  G PV C
Sbjct: 722 PNMGGKSTYIRQ--VGVITVMAQIGCPVPC 749


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1060

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 474  YGAPVWCRALTRRNIAALRRPQRAIAVRAIRG 569
            YG    C+ LT  NI+A  R Q   AVR + G
Sbjct: 1011 YGPSFICKLLTHENISASHRQQLQSAVRNVLG 1042


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -3

Query: 434 YYCVGPPNVWQEPAQRASRRHQPRA*LLEVSAEVGGTCLSF 312
           Y  +G  +     A+RA++ H  +  L+E S  +GGTC+++
Sbjct: 10  YLVIGGGSGGLASARRAAK-HGAKVALIEASGRLGGTCVNY 49


>SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 132 LNEKKMVNELPCF*EEGLLVARRLSNFTRTGERAWVQP 19
           LNE  M+  LP   +EG+ +A+ L+ FT+  E  +  P
Sbjct: 281 LNEH-MLTYLPSIPQEGIRLAKILTTFTKISENVFEAP 317


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 143 RAPISTKRKWSTNYLV 96
           RAP+ST RKW   Y++
Sbjct: 177 RAPLSTSRKWGAYYIM 192


>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 167 RLPVGQRSRAPISTKRKWSTN 105
           R  VG R R   +  RKWSTN
Sbjct: 243 RSGVGSRKRKRATVSRKWSTN 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,085,269
Number of Sequences: 5004
Number of extensions: 56998
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)