Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_M22
         (835 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1054 + 33788244-33788511,33792010-33792117,33792199-337922...    30   2.0  
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952...    29   3.5  
10_08_1013 - 22239396-22239536,22240629-22240715,22240787-22241131     29   3.5  
08_02_0009 + 11216532-11218687,11220727-11225998                       29   3.5  
08_02_0003 + 11180421-11180757,11180773-11185715                       29   3.5  
08_02_0002 + 11173365-11173512,11173528-11178470                       29   3.5  
07_03_0970 - 23034521-23034928,23036173-23037081                       29   6.0  
07_01_0689 - 5218920-5220107                                           29   6.0  

>02_05_1054 +
           33788244-33788511,33792010-33792117,33792199-33792294,
           33792406-33792498,33792598-33792683,33793009-33793433,
           33793534-33793629,33793731-33793836,33793942-33794085
          Length = 473

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 366 EGLTSRSERGSGRDLPVLLPRLRANIFQ 283
           EGLT  S RG+G ++P+  PR    +FQ
Sbjct: 435 EGLTFASVRGAGHEVPLFQPRRAFRMFQ 462


>11_03_0065 -
           9522478-9525335,9525513-9526028,9526432-9527247,
           9527440-9527767
          Length = 1505

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +2

Query: 128 LRWEPEISVQLVICTYRH*QG*QLVCGVCV*QPCATCTQTKGHK 259
           +R + + +++   C Y   Q  ++ C +C+ Q CA C +    K
Sbjct: 648 IRGKGDYNIKCAFCIYYPSQENRVTCSICLKQACAECIKANKQK 691


>10_08_1013 - 22239396-22239536,22240629-22240715,22240787-22241131
          Length = 190

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 194 QLVCGVC-V*QPCATCTQTKGHKLYADSCFYWKMFALSRGKRT 319
           Q  C VC V  PC++    KGH   +D    WK+   +R KRT
Sbjct: 144 QCFCYVCDVPAPCSSWKGEKGHCHASDKDKKWKVKRTARQKRT 186


>08_02_0009 + 11216532-11218687,11220727-11225998
          Length = 2475

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +2

Query: 128  LRWEPEISVQLVICTYRH*QG*QLVCGVCV*QPCATCTQTKGHK 259
            +R + + +++   C Y   Q  ++ C +C+ Q CA C +    K
Sbjct: 1613 IRGKGDYNIKCAFCIYYPSQENRVTCSICLKQACAECIKANKQK 1656


>08_02_0003 + 11180421-11180757,11180773-11185715
          Length = 1759

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +2

Query: 128  LRWEPEISVQLVICTYRH*QG*QLVCGVCV*QPCATCTQTKGHK 259
            +R + + +++   C Y   Q  ++ C +C+ Q CA C +    K
Sbjct: 897  IRGKGDYNIKCAFCIYYPSQENRVTCSICLKQACAECIKANKQK 940


>08_02_0002 + 11173365-11173512,11173528-11178470
          Length = 1696

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +2

Query: 128 LRWEPEISVQLVICTYRH*QG*QLVCGVCV*QPCATCTQTKGHK 259
           +R + + +++   C Y   Q  ++ C +C+ Q CA C +    K
Sbjct: 834 IRGKGDYNIKCAFCIYYPSQENRVTCSICLKQACAECIKANKQK 877


>07_03_0970 - 23034521-23034928,23036173-23037081
          Length = 438

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 629 GPQGGVPGENARRXEGDGAVSTDRPDRD 546
           G +GG  G+NA   +GDG  S D  D D
Sbjct: 205 GGEGGAGGDNADDGDGDGRRSGDDADAD 232


>07_01_0689 - 5218920-5220107
          Length = 395

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = -3

Query: 410 VWQEPAQRASRRHQPRA*LLEVSAEV--GGTCLSFYHG 303
           VW    + A R H PR    E  A+V  GG  L FY G
Sbjct: 350 VWARGCEGAVRLHDPRTGACEEVAQVEKGGCVLGFYSG 387


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,497,047
Number of Sequences: 37544
Number of extensions: 516790
Number of successful extensions: 1460
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1460
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)