Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_M22
         (835 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21308-11|AAB93312.3|  265|Caenorhabditis elegans Roller: helica...    29   3.1  
U21308-10|AAN65281.1|  329|Caenorhabditis elegans Roller: helica...    29   3.1  
M25477-1|AAA27991.1|  329|Caenorhabditis elegans collagen protein.     29   3.1  
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    29   4.1  
AF040660-8|AAN65288.1|  594|Caenorhabditis elegans Hypothetical ...    28   9.5  
AF040660-6|AAN65286.1|  541|Caenorhabditis elegans Hypothetical ...    28   9.5  
AF040660-5|AAC71149.1|  651|Caenorhabditis elegans Hypothetical ...    28   9.5  
AC091124-2|AAK27879.2| 1114|Caenorhabditis elegans Hypothetical ...    28   9.5  

>U21308-11|AAB93312.3|  265|Caenorhabditis elegans Roller: helically
           twisted, animalsroll when moving protein 8, isoform b
           protein.
          Length = 265

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/50 (38%), Positives = 22/50 (44%)
 Frame = +2

Query: 479 GPRVVPRPDSQEHRGPATPAACNRGQGDPWIPHRLLRXGVRSPRGXLPGD 628
           GP+  P PD Q ++GP  P       GD   P    R G   P G  PGD
Sbjct: 204 GPKGNPGPDGQSYQGPPGP------PGDSGTPGHEGRAGPNGPAGP-PGD 246


>U21308-10|AAN65281.1|  329|Caenorhabditis elegans Roller: helically
           twisted, animalsroll when moving protein 8, isoform a
           protein.
          Length = 329

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/50 (38%), Positives = 22/50 (44%)
 Frame = +2

Query: 479 GPRVVPRPDSQEHRGPATPAACNRGQGDPWIPHRLLRXGVRSPRGXLPGD 628
           GP+  P PD Q ++GP  P       GD   P    R G   P G  PGD
Sbjct: 268 GPKGNPGPDGQSYQGPPGP------PGDSGTPGHEGRAGPNGPAGP-PGD 310


>M25477-1|AAA27991.1|  329|Caenorhabditis elegans collagen protein.
          Length = 329

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/50 (38%), Positives = 22/50 (44%)
 Frame = +2

Query: 479 GPRVVPRPDSQEHRGPATPAACNRGQGDPWIPHRLLRXGVRSPRGXLPGD 628
           GP+  P PD Q ++GP  P       GD   P    R G   P G  PGD
Sbjct: 268 GPKGNPGPDGQSYQGPPGP------PGDSGTPGHEGRAGPNGPAGP-PGD 310


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 453 VVRSMALYGAPVWCRALTRRNIAALRRPQRAIAVRAIRG 569
           +++  ALYGAP W   L+  N+  L    R+ A+RA  G
Sbjct: 689 LIKPTALYGAPAWTSLLSDTNLEKLEIAYRS-ALRACVG 726


>AF040660-8|AAN65288.1|  594|Caenorhabditis elegans Hypothetical
           protein W05G11.6d protein.
          Length = 594

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 539 ACNRGQGDPWIPHRLLRXGVRSPRG 613
           ACN G+ + W+   +L  GV +P G
Sbjct: 269 ACNIGRDEGWLAEHMLIMGVTNPEG 293


>AF040660-6|AAN65286.1|  541|Caenorhabditis elegans Hypothetical
           protein W05G11.6b protein.
          Length = 541

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 539 ACNRGQGDPWIPHRLLRXGVRSPRG 613
           ACN G+ + W+   +L  GV +P G
Sbjct: 159 ACNIGRDEGWLAEHMLIMGVTNPEG 183


>AF040660-5|AAC71149.1|  651|Caenorhabditis elegans Hypothetical
           protein W05G11.6a protein.
          Length = 651

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 539 ACNRGQGDPWIPHRLLRXGVRSPRG 613
           ACN G+ + W+   +L  GV +P G
Sbjct: 269 ACNIGRDEGWLAEHMLIMGVTNPEG 293


>AC091124-2|AAK27879.2| 1114|Caenorhabditis elegans Hypothetical
           protein Y47A7.1 protein.
          Length = 1114

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +2

Query: 254 HKLYADSCFYWKMFALSRGKRTGKSLPLPRSLREVRPSADGDGWLVEPAL 403
           H +Y D   Y  + A        + L   RS+ +++PS+  DGW+    L
Sbjct: 267 HSVYPDCLLYVGLLAEVENWEAVEKLS--RSIMQIQPSSTCDGWIARAVL 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,450,047
Number of Sequences: 27780
Number of extensions: 385511
Number of successful extensions: 839
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)