Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_M21
         (861 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1506 + 30641428-30642168                                         31   1.2  
06_02_0122 - 12095385-12095713,12096018-12096120                       30   2.7  
07_03_1747 + 29188568-29188715,29188793-29189541                       29   6.3  
06_02_0125 + 12122812-12122911,12123647-12123993                       28   8.3  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   8.3  

>06_03_1506 + 30641428-30642168
          Length = 246

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -1

Query: 789 GGXXGEXXXPGPXXGGAXGGGFSXKXHAGTIGHGE 685
           G   G    PG   GGA GGG     + GT G+GE
Sbjct: 198 GKGYGYGGGPGGGGGGAGGGGGGGSYNGGTGGYGE 232


>06_02_0122 - 12095385-12095713,12096018-12096120
          Length = 143

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = -1

Query: 813 PPXGXIXXGGXXGEXXXPGPXXGGAXGGGFSXKXHAGTIGHG 688
           P  G    GG  GE   PG   GG  GGG+    + G  G G
Sbjct: 60  PGGGYGYGGGYGGEYGRPG--YGGGYGGGYGHPGYGGGYGGG 99


>07_03_1747 + 29188568-29188715,29188793-29189541
          Length = 298

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +1

Query: 397 PPPGTTLSAPVYLITAPSPG*SAWTLXLQFLCX*TXGPTTCRLARSSSV 543
           PPP TT++  V L TA +   S   +  QF+C      TTC  + S S+
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESL 258


>06_02_0125 + 12122812-12122911,12123647-12123993
          Length = 148

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/55 (29%), Positives = 18/55 (32%)
 Frame = -1

Query: 804 GXIXXGGXXGEXXXPGPXXGGAXGGGFSXKXHAGTIGHGEXSXLATVXGLXNRSG 640
           G    GG  G      P  GG  GGG+    + G  G G         G    SG
Sbjct: 59  GGYGYGGGYGGGGYGHPGYGGGYGGGYGHPGYGGGYGGGYGQGYGCGYGHPGHSG 113


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 426 GRGERSPRRWLQPRLAVPRQASTSVPRTP 340
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,726,885
Number of Sequences: 37544
Number of extensions: 435031
Number of successful extensions: 1609
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1562
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)