Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_M20
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   236   2e-63
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   235   4e-63
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    26   5.8  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  236 bits (578), Expect = 2e-63
 Identities = 115/223 (51%), Positives = 139/223 (62%)
 Frame = +1

Query: 88  TVGVFRKERDGAGLQPSPSRFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAE 267
           TV ++ K+      +     FVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAE
Sbjct: 7   TVSIYNKD-GSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAE 65

Query: 268 SWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXX 447
           SWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH             
Sbjct: 66  SWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIA 125

Query: 448 XXXXXXXXXXXXQARGHIIEKIPELPLXVXDKVQEINKTKQAVIFLRRLKAWSDILKVYK 627
                        ARGH IE+IPE+PL V D VQ   KTK+AV  L+ +KA+ D++KV  
Sbjct: 126 SAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVAN 185

Query: 628 SXRLRAXXXXXXXXXXXXXXXXXXXFNKDQGLTRAFRNXPGVD 756
           S +LRA                   FN+D G+ +AFRN PGV+
Sbjct: 186 SRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIPGVE 228



 Score = 29.1 bits (62), Expect = 0.82
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +3

Query: 798 GXHFGRFVIWTXXAF 842
           G H GRFVIWT  AF
Sbjct: 243 GGHLGRFVIWTKSAF 257


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  235 bits (576), Expect = 4e-63
 Identities = 115/223 (51%), Positives = 139/223 (62%)
 Frame = +1

Query: 88  TVGVFRKERDGAGLQPSPSRFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAE 267
           TV ++ K+      +     FVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAE
Sbjct: 7   TVSIYSKD-GSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAE 65

Query: 268 SWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXX 447
           SWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH             
Sbjct: 66  SWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIS 125

Query: 448 XXXXXXXXXXXXQARGHIIEKIPELPLXVXDKVQEINKTKQAVIFLRRLKAWSDILKVYK 627
                        ARGH IE+IPE+PL V D VQ   KTK+AV  L+ +KA+ D++KV  
Sbjct: 126 SAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVAN 185

Query: 628 SXRLRAXXXXXXXXXXXXXXXXXXXFNKDQGLTRAFRNXPGVD 756
           S +LRA                   FN+D G+ +AFRN PGV+
Sbjct: 186 SRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPGVE 228



 Score = 29.1 bits (62), Expect = 0.82
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +3

Query: 798 GXHFGRFVIWTXXAF 842
           G H GRFVIWT  AF
Sbjct: 243 GGHLGRFVIWTKSAF 257


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 183  DQVRTYGRLEHEXGGAWLQPCTVSLFSEYTDSK 85
            D  +TY  +E E  G +    T   FSEY D K
Sbjct: 905  DLAKTYFFIEDEGDGTYKFKLTYGAFSEYLDVK 937


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,995,064
Number of Sequences: 5004
Number of extensions: 56134
Number of successful extensions: 145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)