Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_M20
(842 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 201 5e-52
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 200 8e-52
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.16
03_05_0366 - 23505755-23506441 34 0.16
06_03_0270 + 19009412-19009888,19009936-19011048,19011810-190118... 30 2.0
04_01_0588 + 7657510-7657992,7658397-7658843 29 6.1
02_04_0457 + 23093020-23093343,23093798-23093806 29 6.1
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 28 8.1
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 201 bits (491), Expect = 5e-52
Identities = 99/203 (48%), Positives = 121/203 (59%), Gaps = 1/203 (0%)
Frame = +1
Query: 151 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 330
VF+AP+RPD+V VH +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR
Sbjct: 31 VFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHR 90
Query: 331 SGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEK 510
+GQGAFGNMCRGGRMFAPTK WR+WH ARGH IE
Sbjct: 91 AGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIET 150
Query: 511 IPELPLXVXDKVQEINKTKQAVIFLRRLKAWSDILKVYKSXRLRAXXXXXXXXXXXXXXX 690
+PELPL + D + I KT QA+ L+++ A++D K S +R
Sbjct: 151 VPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKG 210
Query: 691 XXXXFNKD-QGLTRAFRNXPGVD 756
+ + + +AFRN PGVD
Sbjct: 211 PLIVYGTEGSKIVKAFRNLPGVD 233
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3
Query: 798 GXHFGRFVIWTXXAF 842
G H GRFVIWT AF
Sbjct: 248 GGHLGRFVIWTESAF 262
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 200 bits (489), Expect = 8e-52
Identities = 104/215 (48%), Positives = 126/215 (58%), Gaps = 1/215 (0%)
Frame = +1
Query: 115 DGAGLQPSPSRFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVA 294
D AG+Q P V +APIRPD+V H +S N RQPY VS+ AGHQTSAESWGTGRAV+
Sbjct: 21 DSAGIQ-MPQ--VLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGRAVS 77
Query: 295 RIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXX 474
RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 78 RIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAVP 137
Query: 475 XXXQARGHIIEKIPELPLXVXDKVQEINKTKQAVIFLRRLKAWSDILKVYKSXRLRAXXX 654
ARGH IE +PE PL V D ++ I KT Q++ L+++ A++D K S +RA
Sbjct: 138 SLVLARGHRIEGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKG 197
Query: 655 XXXXXXXXXXXXXXXXFNKD-QGLTRAFRNXPGVD 756
+ + + +AFRN PGVD
Sbjct: 198 KMRNRRYINRKGPLIVYGTEGSKVVKAFRNLPGVD 232
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3
Query: 798 GXHFGRFVIWTXXAF 842
G H GRFVIWT AF
Sbjct: 247 GGHLGRFVIWTECAF 261
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.16
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +1
Query: 262 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 372
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>03_05_0366 - 23505755-23506441
Length = 228
Score = 33.9 bits (74), Expect = 0.16
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Frame = +1
Query: 103 RKERDGAGLQPSP---SRFVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAES 270
R+ + G+G + P ++ AP D +V S + R P C S E + +AES
Sbjct: 90 RQRQGGSGWERHPWPHDSWIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAES 149
Query: 271 WGTGRAVARIPRVRGGGTHRSGQGA 345
TG A R R+ G T+ + + A
Sbjct: 150 GATGLAHTRAGRIHAGPTNDNDEEA 174
>06_03_0270 +
19009412-19009888,19009936-19011048,19011810-19011899,
19011928-19012027,19012135-19012333,19012559-19012679
Length = 699
Score = 30.3 bits (65), Expect = 2.0
Identities = 28/104 (26%), Positives = 39/104 (37%)
Frame = +1
Query: 88 TVGVFRKERDGAGLQPSPSRFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAE 267
T+G F +RD P +R K P + + + +++ R P V T +
Sbjct: 24 TLG-FLTKRDTEVKLPRATRVKNKTPASVQITAEQILREARSGRSPRSVPPSRRSPTPSS 82
Query: 268 SWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWR 399
S T A AR R G A G+ GGR T P R
Sbjct: 83 SPSTASAAARSSRTPSAAP--GGTSARGSSTPGGRSGRGTSPAR 124
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +1
Query: 184 NDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGN 354
+D+ ++ SR + + ++S+ W G R+ + GGG R G
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260
Query: 355 MCRGGRMFAPTKPWRRW 405
P PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +1
Query: 247 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 351
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/34 (29%), Positives = 14/34 (41%)
Frame = -2
Query: 340 PDRTYEYHHHGHAEFGRQHVRYPMIRHWFGDQPP 239
P + +HHHGH + + H G PP
Sbjct: 33 PQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPP 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,158,945
Number of Sequences: 37544
Number of extensions: 482175
Number of successful extensions: 1409
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1399
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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