Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_M16
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...   130   2e-31
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    28   1.4  

>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score =  130 bits (314), Expect = 2e-31
 Identities = 76/185 (41%), Positives = 103/185 (55%)
 Frame = +3

Query: 3   LAKVATKFRKGACENCGAMTHKKKDCLERPXKIGAKFTNAGIAADEFAQPDLNLSYDGKR 182
           L   ATK+RKGACENCGAM+HK KDC+ERP K GA++T   I ADE  Q D+N+S+D KR
Sbjct: 101 LGPAATKYRKGACENCGAMSHKVKDCMERPRKRGARWTGEDIQADEVIQ-DINVSWDAKR 159

Query: 183 DRWNGYDPEQHKAIIEEYXKVXEAKRXLXXKKLXIDPTAXXXXXXXXXXXXXXXXXXXMP 362
           DRWNGYD   +K +IE Y K+ E +      +   + +A                   + 
Sbjct: 160 DRWNGYDATDYKKVIERYEKLDELQNKGEENRDASENSA-----------VKASRNSTVS 208

Query: 363 GTKVDSKQRITVRNLRIREGTAKYLRNLDPNSAYYDPXTRSMXDNPTPNVPESEYGGENS 542
           G++ DS   IT  +LR+RE    YLR  D  +  Y+P +RSM D    ++ +   GG   
Sbjct: 209 GSE-DSAS-ITTPSLRMREDVVAYLR-ADNKNLQYEPKSRSMRDETGYHMVDDSSGGAGF 265

Query: 543 VRVSG 557
           V+ SG
Sbjct: 266 VKASG 270


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 39  CENCGAMTHKKKDCLER 89
           C+NCG + H++ DC ER
Sbjct: 311 CQNCGNVGHRRFDCPER 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,239,191
Number of Sequences: 5004
Number of extensions: 32750
Number of successful extensions: 101
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)