Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_M16
         (835 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC010634-1|AAH10634.1|  586|Homo sapiens SLU7 splicing factor ho...   142   1e-33
AF101074-1|AAD13774.1|  586|Homo sapiens step II splicing factor...   142   1e-33

>BC010634-1|AAH10634.1|  586|Homo sapiens SLU7 splicing factor
           homolog (S. cerevisiae) protein.
          Length = 586

 Score =  142 bits (345), Expect = 1e-33
 Identities = 62/90 (68%), Positives = 69/90 (76%)
 Frame = +3

Query: 12  VATKFRKGACENCGAMTHKKKDCLERPXKIGAKFTNAGIAADEFAQPDLNLSYDGKRDRW 191
           V TK+RKGACENCGAMTHKKKDC ERP ++GAKFT   IA DE  QP L   YDGKRDRW
Sbjct: 111 VITKYRKGACENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRW 170

Query: 192 NGYDPEQHKAIIEEYXKVXEAKRXLXXKKL 281
           NGY+PE+H  I+EEY KV  AKR L  +KL
Sbjct: 171 NGYNPEEHMKIVEEYAKVDLAKRTLKAQKL 200



 Score =  125 bits (302), Expect = 2e-28
 Identities = 66/134 (49%), Positives = 78/134 (58%), Gaps = 4/134 (2%)
 Frame = +3

Query: 357 MPGTKVDSKQRITVRNLRIREGTAKYLRNLDPNSAYYDPXTRSMXDNPTPNV----PESE 524
           MPG   DSK+RITVRNLRIRE  AKYLRNLDPNSAYYDP TR+M +NP  N      E  
Sbjct: 249 MPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANAGKNPDEVS 308

Query: 525 YGGENSVRVSGDTXXXXXXXXXXXXXXXXXXXXXXXXEPTKLXMLQAHYKRXQXRYKSXV 704
           Y G+N VR +GDT                        +PTKL +L   +K  +  +K   
Sbjct: 309 YAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVKKEDFKEQQ 368

Query: 705 KQSILEXYGGEEHL 746
           K+SILE YGG+EHL
Sbjct: 369 KESILEKYGGQEHL 382


>AF101074-1|AAD13774.1|  586|Homo sapiens step II splicing factor
           SLU7 protein.
          Length = 586

 Score =  142 bits (344), Expect = 1e-33
 Identities = 61/90 (67%), Positives = 69/90 (76%)
 Frame = +3

Query: 12  VATKFRKGACENCGAMTHKKKDCLERPXKIGAKFTNAGIAADEFAQPDLNLSYDGKRDRW 191
           + TK+RKGACENCGAMTHKKKDC ERP ++GAKFT   IA DE  QP L   YDGKRDRW
Sbjct: 111 IITKYRKGACENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRW 170

Query: 192 NGYDPEQHKAIIEEYXKVXEAKRXLXXKKL 281
           NGY+PE+H  I+EEY KV  AKR L  +KL
Sbjct: 171 NGYNPEEHMKIVEEYAKVDLAKRTLKAQKL 200



 Score =  125 bits (302), Expect = 2e-28
 Identities = 66/134 (49%), Positives = 78/134 (58%), Gaps = 4/134 (2%)
 Frame = +3

Query: 357 MPGTKVDSKQRITVRNLRIREGTAKYLRNLDPNSAYYDPXTRSMXDNPTPNV----PESE 524
           MPG   DSK+RITVRNLRIRE  AKYLRNLDPNSAYYDP TR+M +NP  N      E  
Sbjct: 249 MPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANAGKNPDEVS 308

Query: 525 YGGENSVRVSGDTXXXXXXXXXXXXXXXXXXXXXXXXEPTKLXMLQAHYKRXQXRYKSXV 704
           Y G+N VR +GDT                        +PTKL +L   +K  +  +K   
Sbjct: 309 YAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVKKEDFKEQQ 368

Query: 705 KQSILEXYGGEEHL 746
           K+SILE YGG+EHL
Sbjct: 369 KESILEKYGGQEHL 382


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,204,092
Number of Sequences: 237096
Number of extensions: 1364811
Number of successful extensions: 3690
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3686
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10482413384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)