Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_M15
(828 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 65 1e-11
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 58 1e-09
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 54 3e-08
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 52 1e-07
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 51 2e-07
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 50 3e-07
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 49 9e-07
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 48 1e-06
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 48 2e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 47 4e-06
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 43 5e-05
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 41 2e-04
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 41 2e-04
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 40 3e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 40 3e-04
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 40 3e-04
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 40 6e-04
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 38 0.001
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 38 0.002
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 38 0.002
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 37 0.003
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 37 0.003
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 36 0.005
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 36 0.009
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 34 0.021
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 34 0.028
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 33 0.037
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 33 0.049
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 32 0.086
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 31 0.20
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 31 0.20
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 30 0.46
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ... 29 1.1
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 27 3.2
SPAC186.06 |||human MAWBP homolog|Schizosaccharomyces pombe|chr ... 26 5.7
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 25 9.9
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 25 9.9
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 25 9.9
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 64.9 bits (151), Expect = 1e-11
Identities = 34/90 (37%), Positives = 49/90 (54%)
Frame = +3
Query: 468 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEXAXIAKNEC 647
L V G++ E ++ IFSK+G V V+++ + T SRGF F+ F +E A A +
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 648 XGMEIDGRRIRVDYSITQRAHTPTPGXYMG 737
E GR + V + R H+PTPG YMG
Sbjct: 163 NSQEFYGRVLNVQKAKRSRPHSPTPGKYMG 192
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 58.4 bits (135), Expect = 1e-09
Identities = 28/77 (36%), Positives = 45/77 (58%)
Frame = +3
Query: 456 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEXAXIA 635
P + + + LS T E I F++YGP+++++VV + TG+S G+ FV FE +A
Sbjct: 98 PYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVA 157
Query: 636 KNECXGMEIDGRRIRVD 686
G+ ++GRRI VD
Sbjct: 158 YKASAGLMLNGRRIVVD 174
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 53.6 bits (123), Expect = 3e-08
Identities = 30/85 (35%), Positives = 45/85 (52%)
Frame = +3
Query: 432 VRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFE 611
+R L+ S C+ V LS YTTE+QI +FSK G + ++ + +D T GFCFV +
Sbjct: 22 LRALDAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYF 81
Query: 612 DMEXAXIAKNECXGMEIDGRRIRVD 686
+ + A + +D R IR D
Sbjct: 82 ENQDALDSLKYISRTSLDERIIRAD 106
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 51.6 bits (118), Expect = 1e-07
Identities = 23/64 (35%), Positives = 39/64 (60%)
Frame = +3
Query: 498 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEXAXIAKNECXGMEIDGRRI 677
+EQQ+ IF++ GPV ++V+D +TG +G+ F F D E +A + E+ R+I
Sbjct: 19 SEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKI 78
Query: 678 RVDY 689
RV++
Sbjct: 79 RVEF 82
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 51.2 bits (117), Expect = 2e-07
Identities = 25/79 (31%), Positives = 43/79 (54%)
Frame = +3
Query: 468 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEXAXIAKNEC 647
L V L+ T + + + FS GP+ VV + +TG +RG+ FV F +E A A E
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 648 XGMEIDGRRIRVDYSITQR 704
++ GR +R+D++ ++
Sbjct: 67 KNKKLHGRILRLDFATPRK 85
Score = 50.8 bits (116), Expect = 2e-07
Identities = 27/72 (37%), Positives = 41/72 (56%)
Frame = +3
Query: 504 QQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEXAXIAKNECXGMEIDGRRIRV 683
Q + FSK+G V ++++ GR GF FV+ +D + A A N G EIDGR I V
Sbjct: 122 QHLEPHFSKFGKVREIKIPTKGG-GRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAV 180
Query: 684 DYSITQRAHTPT 719
D+++++ A T
Sbjct: 181 DWAVSKDAFEAT 192
Score = 30.3 bits (65), Expect = 0.35
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 498 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF 608
TEQ++ + F ++GP+ ++V D T RS G F+ F
Sbjct: 289 TEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKF 325
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 567 AKTGRSRGFCFVYFEDMEXAXIAKNECXGMEIDGRRI 677
A GRS+GF F+ F + A +A G EI ++I
Sbjct: 533 AGAGRSKGFGFMQFISHKYALMALRWLNGREITVKKI 569
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 50.4 bits (115), Expect = 3e-07
Identities = 28/80 (35%), Positives = 42/80 (52%)
Frame = +3
Query: 483 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEXAXIAKNECXGMEI 662
LS +Q + F +YG + +V++D ++GRS+G+ +V FE E A A EI
Sbjct: 270 LSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEI 329
Query: 663 DGRRIRVDYSITQRAHTPTP 722
DGR + +D S R P P
Sbjct: 330 DGRMVNLDLS-NPRPANPQP 348
Score = 44.8 bits (101), Expect = 2e-05
Identities = 26/79 (32%), Positives = 41/79 (51%)
Frame = +3
Query: 456 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEXAXIA 635
PS + V LS TE ++ F G + +++ D ++GR +GF +V F D++ A
Sbjct: 364 PSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKC 423
Query: 636 KNECXGMEIDGRRIRVDYS 692
E G I GR R+D+S
Sbjct: 424 V-EMNGHFIAGRPCRLDFS 441
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 48.8 bits (111), Expect = 9e-07
Identities = 24/78 (30%), Positives = 44/78 (56%)
Frame = +3
Query: 459 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEXAXIAK 638
S L V LS T E+++ +F ++G + +V + D +TGR++GF FV + D + A A+
Sbjct: 201 SATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKAR 260
Query: 639 NECXGMEIDGRRIRVDYS 692
+ G + +R ++S
Sbjct: 261 DRLDGYGWNNLILRCEFS 278
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 48.4 bits (110), Expect = 1e-06
Identities = 26/79 (32%), Positives = 42/79 (53%)
Frame = +3
Query: 456 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEXAXIA 635
P L V L+ T ++ + IFS++G + QV+ D +TG S + F+ F++ E A
Sbjct: 242 PENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKA 301
Query: 636 KNECXGMEIDGRRIRVDYS 692
+ + ID RI VD+S
Sbjct: 302 YFKMQNVLIDDSRIHVDFS 320
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 48.0 bits (109), Expect = 2e-06
Identities = 25/78 (32%), Positives = 40/78 (51%)
Frame = +3
Query: 456 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEXAXIA 635
PS + V + E+Q+ IF + GPV Q+VID ++G+ +G+ F + D A A
Sbjct: 3 PSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASA 62
Query: 636 KNECXGMEIDGRRIRVDY 689
+ RR+RVD+
Sbjct: 63 VRNLNNYDAGTRRLRVDF 80
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 46.8 bits (106), Expect = 4e-06
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Frame = +3
Query: 501 EQQINHIFSKYG-PVDKVQVVIDAKTGRSRGFCFVYFEDMEXAXIAKNECXGMEIDGRRI 677
E I +FS++G PVD + +V D +TG+S+GF F+ +ED +A + +++ R +
Sbjct: 44 EDDILCVFSEFGEPVD-INLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLV 102
Query: 678 RVD----YSITQRAHTP 716
RVD Y + Q+ P
Sbjct: 103 RVDHVASYKVPQKEKEP 119
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 43.2 bits (97), Expect = 5e-05
Identities = 19/76 (25%), Positives = 42/76 (55%)
Frame = +3
Query: 474 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEXAXIAKNECXG 653
V G+ TE+Q+ +F+ +GPV + + +D +TG +G+ + + +E A A +E
Sbjct: 14 VTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDE-KN 72
Query: 654 MEIDGRRIRVDYSITQ 701
+ + ++ VD++ +
Sbjct: 73 LSLLDEKLEVDFAFLE 88
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 41.1 bits (92), Expect = 2e-04
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = +3
Query: 429 RVRLLENPTPS---RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCF 599
RV + +P P RC+ V L+ E+ + F G +D V++V D KT +GF +
Sbjct: 256 RVDSVSHPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAY 315
Query: 600 VYFED 614
+ F+D
Sbjct: 316 IQFKD 320
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 41.1 bits (92), Expect = 2e-04
Identities = 21/88 (23%), Positives = 43/88 (48%)
Frame = +3
Query: 420 LGDRVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCF 599
+ ++ R ++ + ++ L + L+ E + +F +G +++V + ID KT +GF +
Sbjct: 309 VSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAY 368
Query: 600 VYFEDMEXAXIAKNECXGMEIDGRRIRV 683
+ F D + A A E GR + V
Sbjct: 369 IDFHDADDAVRAYLELDAKPFQGRLLHV 396
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 582 SRGFCFVYFEDMEXAXIAKNECXGMEIDGRRIRVDYS 692
S GF FV F+D A A + G +DG ++ + S
Sbjct: 664 SMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLS 700
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 40.3 bits (90), Expect = 3e-04
Identities = 21/76 (27%), Positives = 40/76 (52%)
Frame = +3
Query: 456 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEXAXIA 635
P R + V L+ T++ I IF YG +D + + I K+ ++G+C++ + + A A
Sbjct: 97 PLRTILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANA 156
Query: 636 KNECXGMEIDGRRIRV 683
++ E+DG + V
Sbjct: 157 VDKMNNAELDGEELFV 172
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 40.3 bits (90), Expect = 3e-04
Identities = 26/88 (29%), Positives = 44/88 (50%)
Frame = +3
Query: 459 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEXAXIAK 638
S C+ V L T+++ + +F+ G V + ++ + TGRS+GF V FE+ A +
Sbjct: 279 SDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSI 337
Query: 639 NECXGMEIDGRRIRVDYSITQRAHTPTP 722
+ G GR +++ Y AH TP
Sbjct: 338 EKLNGYRYGGRPLQLSY-----AHYATP 360
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 40.3 bits (90), Expect = 3e-04
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Frame = +3
Query: 480 GLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEXAXIAKNECXGME 659
GL+ TT+ + F ++G V V+ D+ TGRSRGF F+ F++ + NE E
Sbjct: 169 GLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCV----NEVMSKE 224
Query: 660 --IDGRRIRVDYSITQRAHTPTPGXYMG 737
+DG+ I +I + T ++G
Sbjct: 225 HHLDGKIIDPKRAIPREEQEKTAKMFVG 252
Score = 37.9 bits (84), Expect = 0.002
Identities = 21/62 (33%), Positives = 35/62 (56%)
Frame = +3
Query: 498 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEXAXIAKNECXGMEIDGRRI 677
TE++ + F+++G V +++D TGR RGF FV +E+ E A A + I G+ +
Sbjct: 259 TEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN-ESAVEATMSQPYITIHGKPV 317
Query: 678 RV 683
V
Sbjct: 318 EV 319
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 39.5 bits (88), Expect = 6e-04
Identities = 20/69 (28%), Positives = 37/69 (53%)
Frame = +3
Query: 486 SLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEXAXIAKNECXGMEID 665
++ T + Q+ +FS +G + + +G S+G+ FV F +E A AK+ GM +
Sbjct: 392 TVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVG 451
Query: 666 GRRIRVDYS 692
+RI V ++
Sbjct: 452 KKRIFVCFA 460
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 38.3 bits (85), Expect = 0.001
Identities = 15/44 (34%), Positives = 30/44 (68%)
Frame = +3
Query: 501 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEXAXI 632
E+Q+ FS++GPV ++++ + KTG S+ + F+ FE ++ A +
Sbjct: 118 EKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANV 161
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/73 (23%), Positives = 35/73 (47%)
Frame = +3
Query: 474 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEXAXIAKNECXG 653
+ L L E Q+ + +G + Q++ + G S+GFCF F++ A +A + G
Sbjct: 314 ISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGLDG 373
Query: 654 MEIDGRRIRVDYS 692
+ G ++ ++
Sbjct: 374 KDTYGNKLHAQFA 386
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 37.5 bits (83), Expect = 0.002
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Frame = +3
Query: 456 PSRCLGVFGLSLYTTEQQ----INHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEX 623
P CL V L+ +E++ + F ++GP+ V+V+ K R + FV F++ +
Sbjct: 77 PVACLFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVL---KDWLQRPYSFVQFQNTDD 133
Query: 624 AXIAKNECXGMEIDGRRIRVDYSITQR 704
A A +E +DGR IR++ + R
Sbjct: 134 ASKALSEAQNTILDGRHIRIERAKVNR 160
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = +3
Query: 456 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDME 620
PS L V L TT+ + F + G + +V+++ TG+ +GF FV F D++
Sbjct: 226 PSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDID 280
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 37.1 bits (82), Expect = 0.003
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +3
Query: 435 RLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF-- 608
+L E R + V L+ T +++ F + GPV Q+V D +GRS+G +V F
Sbjct: 231 KLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCH 290
Query: 609 EDMEXAXIA 635
ED A IA
Sbjct: 291 EDSVQAAIA 299
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 36.3 bits (80), Expect = 0.005
Identities = 25/78 (32%), Positives = 39/78 (50%)
Frame = +3
Query: 474 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEXAXIAKNECXG 653
V LS TE + F + V +++VID T RSRGF +V FE + A G
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAAL-ALSG 154
Query: 654 MEIDGRRIRVDYSITQRA 707
++ GR +R+ + +R+
Sbjct: 155 EDLMGRPVRITVAEPRRS 172
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 35.5 bits (78), Expect = 0.009
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +3
Query: 501 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEXAXIAKNECXGMEIDGRRIR 680
++ + FS+Y + K +VV D + G++RGF FV F+D + A E G I R ++
Sbjct: 43 DESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPVK 101
Query: 681 V 683
+
Sbjct: 102 L 102
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 34.3 bits (75), Expect = 0.021
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +3
Query: 483 LSLYTTEQQINHIF-SKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEXAXIAKNECXGME 659
LS E + +F S+Y +++ D +T SRG+ FV F D A E G
Sbjct: 193 LSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQI 252
Query: 660 IDGRRIRVDYSITQ-RAHTPTP 722
R IRV + + +AH +P
Sbjct: 253 CGDRPIRVGLATPKSKAHVFSP 274
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 33.9 bits (74), Expect = 0.028
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +3
Query: 504 QQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEXAXIAKNECXGMEIDGRRIRV 683
QQ+ +FSK+G + + T S+G+ FV F A A N G+ +R+ V
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFV 494
Query: 684 DYS 692
+Y+
Sbjct: 495 NYA 497
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 33.5 bits (73), Expect = 0.037
Identities = 16/64 (25%), Positives = 36/64 (56%)
Frame = +3
Query: 441 LENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDME 620
+E+ + +R + + GL T+++ + +++G V + +ID +T +G+ F FE+ +
Sbjct: 289 MESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEK 348
Query: 621 XAXI 632
A I
Sbjct: 349 SALI 352
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 33.1 bits (72), Expect = 0.049
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = +3
Query: 474 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEXAXIAKNECXG 653
V L E+ + +F + P+ +V + D + GRS G C VYFE + A A+
Sbjct: 89 VENLHYQVLEKDVLSLFENFHPI-RVIMNYD-RAGRSEGSCDVYFETSQDAEDAQKTLQS 146
Query: 654 MEIDGRRIRV 683
+ G I++
Sbjct: 147 TNLKGSEIQI 156
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 32.3 bits (70), Expect = 0.086
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +3
Query: 462 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEXAXIAKN 641
R L V G +++ + F +GP+ + + I +T SR F FV +ED A A
Sbjct: 7 RTLYVTGFRDGMRARELAYEFEPFGPLIRCDIPIP-RTRTSRPFAFVEYEDSRDAEDAYY 65
Query: 642 ECXG--MEIDGRRIRVDYS 692
E G +E G +RV+++
Sbjct: 66 EVHGRRLERGGGVLRVEWA 84
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 31.1 bits (67), Expect = 0.20
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 576 GRSRGFCFVYFEDMEXAXIAKNECXGMEIDGRRIRVDY 689
G RG F F E A + G EI+GRR+RV++
Sbjct: 240 GIFRGLAFANFYRPEEAQVVVQTLNGYEINGRRLRVEW 277
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 31.1 bits (67), Expect = 0.20
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +3
Query: 474 VFGLSLYTTEQQINHIFSK-YGPVDKVQVVIDAKTGRSRGFCFVYFEDMEXAXIAKNECX 650
V L TE Q+ +F K GP +V + GRS+G + F A A +
Sbjct: 59 VSNLPTDVTEAQVKELFVKSIGPCKRVSLAY-GPNGRSKGIATIIFSRPGDATRAYEQYE 117
Query: 651 GMEIDG-RRIRVD 686
G +DG R+++V+
Sbjct: 118 GRLVDGTRKMKVE 130
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 29.9 bits (64), Expect = 0.46
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +3
Query: 501 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEXAXIAKNECXGMEIDGRRIR 680
++++ FS +G + +++ D + G+S+GF FV + E A A E + G+ +
Sbjct: 377 DERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLY 435
Query: 681 V 683
V
Sbjct: 436 V 436
>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 362
Score = 28.7 bits (61), Expect = 1.1
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Frame = -3
Query: 232 RLRLCPLDITAGFGT----GSREPLRVLERLLSRSDIAMFVVNKRDKSEISRIFS-INTL 68
+L+ +D+ AG+GT G P R +ERL + + A+F + +++ S I L
Sbjct: 37 KLKFDFIDLDAGWGTFERTGKALPERTVERLKTECNAALFGAVQSPTHKVAGYSSPIVAL 96
Query: 67 KRSTSIYRRDRTLKTTKSEK 8
++ +Y R +K+ K
Sbjct: 97 RKKMGLYANVRPVKSLDGAK 116
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 601 TKQNPRERPVFASITTCTLSTGPYLEKIW 515
+K NP + P A++T C T +++K+W
Sbjct: 103 SKNNPNQNPQAAALTKCREQT--FVDKVW 129
>SPAC186.06 |||human MAWBP homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 184
Score = 26.2 bits (55), Expect = 5.7
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = -2
Query: 659 FHSGAFILCNXSXFHVLKVNEAKPSGATCLCINYNLHFVNGSILRKDMVYLLFSCIKTKS 480
++ G + L + H + + A SGA + + + L+ N SI+ D +LLF+ K
Sbjct: 92 YNDGTYELRSFCPVHGVNEDPANGSGAGSVGVFFALN--NPSIISSDFAHLLFNQGKILG 149
Query: 479 KN 474
+N
Sbjct: 150 RN 151
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 9.9
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = -2
Query: 752 LIVGFPHVXARSGSVSSLCYG 690
L+VG+ + + +V+++CYG
Sbjct: 267 LLVGYKRIVVKDSAVNAICYG 287
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.4 bits (53), Expect = 9.9
Identities = 26/102 (25%), Positives = 40/102 (39%)
Frame = +3
Query: 459 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEXAXIAK 638
S+ LGV + E ++ +F YG + +V V+ G V F D+ A A
Sbjct: 873 SKSLGVTNVDGTVNEARLRSLFESYGKLYRV-VLHPEHEG-----AVVEFLDIHDAGKAS 926
Query: 639 NECXGMEIDGRRIRVDYSITQRAHTPTPGXYMGKTYNKXQXR 764
G EI GR + + ++ + H P YN R
Sbjct: 927 LALEGHEIGGRLLHIT-TVNEMMHN-VPSSMNHSDYNTSATR 966
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 9.9
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 1 YWVFPILLSSTCGRVCRLKLI 63
+W+ P+ L S+ G CR L+
Sbjct: 293 WWIIPMALGSSAGLACRALLL 313
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,786,387
Number of Sequences: 5004
Number of extensions: 50169
Number of successful extensions: 152
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -