Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_M13
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    27   2.8  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   3.7  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    27   4.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   6.4  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   6.4  

>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 150

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/49 (32%), Positives = 19/49 (38%)
 Frame = +2

Query: 596 PIPYTNPPQXLTXISIXPPEXPTXNEFXPXX*XPPLVIKRLHSXYFNPP 742
           P PYT  P+     +I  P  P    + P    PP V     S  F PP
Sbjct: 79  PPPYTAEPEARYNSTIHNPMPPMSQAYRPPPTEPPTVPAYETSSEFPPP 127


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 548 PSPWRSRLHQPRSSNPPIPYTN 613
           P P+RS   QP SS PP P T+
Sbjct: 61  PLPFRSTSLQPPSSQPPAPPTH 82


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 239 LFDDMIICFQSLXFDLTGTETKSNSVTVQSLPNVSS 346
           + +D+I C  S  + ++ T+ K  +   Q L N+SS
Sbjct: 704 IINDLITCLNSFLYHVSATKKKEFTRQYQLLKNISS 739


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = +2

Query: 521 AVSPLCIXPPSPWRSRLHQPRSSNPPIPYTNPPQXLTXISIXPPEXPTXNEFXP 682
           A  P    PP+P +S L  P S+ PP P   PP   +   I     P  +   P
Sbjct: 122 AAPPSAPAPPTP-QSELRPPTSA-PPRPSIPPPSPASAPPIPSKAPPIPSSLPP 173


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 516 YWRSRPYASXHPPPGDLGYINPDH 587
           YW+ R       PP  LGY+ P++
Sbjct: 52  YWQQRGNEFQASPPPPLGYVTPEY 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,231,710
Number of Sequences: 5004
Number of extensions: 58813
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)