Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_M13
(907 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1174 - 26696869-26698191 33 0.41
01_06_0146 + 26969011-26969995,26970878-26970930 31 1.3
03_05_0576 + 25765137-25766420 30 2.2
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 30 2.2
12_02_0299 - 17051570-17052474,17053542-17053755 26 3.6
08_01_0059 - 394001-394708 29 3.8
03_02_0719 + 10654842-10654977,10655039-10655124,10655226-106570... 29 3.8
07_03_1606 + 28111158-28111328,28111431-28111549,28111984-281120... 29 5.1
10_02_0157 - 5954439-5954801,5956244-5956270,5956465-5956526,595... 29 6.7
09_02_0569 - 10752756-10753164,10753229-10753644,10754149-107553... 29 6.7
06_03_1310 + 29238644-29240260 29 6.7
06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797 29 6.7
01_01_0761 - 5874953-5876803 29 6.7
11_06_0610 - 25449085-25453284 28 8.9
10_03_0023 - 7151465-7152111,7152222-7152405 28 8.9
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 8.9
>12_02_1174 - 26696869-26698191
Length = 440
Score = 32.7 bits (71), Expect = 0.41
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Frame = +2
Query: 524 VSPLCIXPPSPWRSRLHQPR------SSNPPIPYTNPPQXL-TXISIXPPEXPTXNEFXP 682
V P PP P R+ + PR S PP P PP+ + ++ PPE PT + P
Sbjct: 240 VEPKPQPPPPPPRAPVKMPRVLEPKPSPPPPSPLPPPPEDYWSPTAVTPPE-PTKPK--P 296
Query: 683 XX*XPPLVIKRLHSXYFNPPP 745
PP ++ Y+ PPP
Sbjct: 297 PPPSPPPPPQQPSQRYWTPPP 317
>01_06_0146 + 26969011-26969995,26970878-26970930
Length = 345
Score = 31.1 bits (67), Expect = 1.3
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 545 PPSPWRSRLHQPRSSNPPIPYTNPPQXLTXISIXPPEXP 661
PP P +R QPR++ PP P + P + PP P
Sbjct: 88 PPLPHDNRTPQPRAAPPPAPAPDQPAPPSPPPSLPPSPP 126
>03_05_0576 + 25765137-25766420
Length = 427
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 548 PSPWRSRLHQPRSSNPPIPYTNPPQXLTXISIXPPEXP 661
PSP S P+ S+PP P +PP +S+ PP P
Sbjct: 71 PSPSPSPSPPPQPSSPPPPPPSPP-PAAAVSVSPPTQP 107
>01_06_0823 + 32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +2
Query: 530 PLCIXPPSPWRSRLHQPRSSNPPIPYTNPPQXLTXISIXPPEXP 661
P + PP R + P S PP+P T PP + PP P
Sbjct: 970 PPNVAPPPFTRQDIPPPPPSPPPLPITQPPSVPPPPNSPPPLQP 1013
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 26.2 bits (55), Expect(2) = 3.6
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Frame = +2
Query: 545 PPSPWRS-RLHQPRSSNPPIPYTNPP 619
PP PW PR PPIP+ PP
Sbjct: 210 PPWPWPPIPFCTPRPWFPPIPFLTPP 235
Score = 21.8 bits (44), Expect(2) = 3.6
Identities = 23/80 (28%), Positives = 26/80 (32%)
Frame = +2
Query: 593 PPIPYTNPPQXLTXISIXPPEXPTXNEFXPXX*XPPLVIKRLHSXYFNPPPXTGALG*XG 772
PPIP+ PP S PP P P P L + P P
Sbjct: 245 PPIPFLTPP------SPPPPAFPFPLPPWPWAPPPAFPFPHLPPIFSPPSPPPP----PP 294
Query: 773 VSXPLXFQXEMMNPHAFPPL 832
+ P F PH FPPL
Sbjct: 295 PAFPFPFPQLPPLPH-FPPL 313
>08_01_0059 - 394001-394708
Length = 235
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/53 (33%), Positives = 21/53 (39%)
Frame = +2
Query: 545 PPSPWRSRLHQPRSSNPPIPYTNPPQXLTXISIXPPEXPTXNEFXPXX*XPPL 703
PP P R P ++ PP P PP I PP PT + P PL
Sbjct: 2 PPPPPPRRAPPPPATPPPPPRRAPPPPSP--PIRPPPPPTPRPYAPPPPSHPL 52
>03_02_0719 +
10654842-10654977,10655039-10655124,10655226-10657001,
10657782-10657926,10658017-10658735
Length = 953
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = -1
Query: 907 VFWNXGGLIXKKGEPELXXGXDELIKGGEGVGIHHFXLEXKGGGNPXLAQCPSXRRGVEI 728
+F G + K+GE L G LI EG+G+ F KG + A + G E+
Sbjct: 51 IFVTEGAKLVKRGEETLPSGRLHLIDDDEGIGVSSF----KGSSDYSCASSVTDEEGREM 106
Query: 727 R 725
+
Sbjct: 107 K 107
>07_03_1606 +
28111158-28111328,28111431-28111549,28111984-28112024,
28112654-28112713,28112812-28112858,28112939-28113133,
28113236-28113282,28113363-28113429,28113521-28113621,
28113725-28113826,28113904-28114042,28114120-28114182,
28114323-28114406,28114981-28115295
Length = 516
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 438 DLCWTTADVTVEXVNVLVT-PSSSRHYYWRSRPYASXHPPPGDLGYI 575
DL TT V + +L+T P+ + HYYWR A P G G++
Sbjct: 455 DLESTTNIVRPSSLRMLLTKPTHTVHYYWRKFDDALMRPMFGGRGFV 501
>10_02_0157 -
5954439-5954801,5956244-5956270,5956465-5956526,
5956971-5957592
Length = 357
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/57 (29%), Positives = 21/57 (36%)
Frame = +2
Query: 530 PLCIXPPSPWRSRLHQPRSSNPPIPYTNPPQXLTXISIXPPEXPTXNEFXPXX*XPP 700
P + PPS + P PP+P T PP + PP P P PP
Sbjct: 27 PPAVVPPSLPTTTPPAPTVVAPPLPTTPPPAVVAPSPPLPPLTPPPAIVPPALPPPP 83
>09_02_0569 -
10752756-10753164,10753229-10753644,10754149-10755349,
10756770-10756991,10757615-10757767,10757883-10758034,
10758142-10758222,10758353-10758598,10759394-10759516
Length = 1000
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 503 LSPLLLAVSPLCIXPPSPWRSRLHQPRSSNPPIPYTNP 616
L +LL V P + PP P + P PP+ +NP
Sbjct: 3 LRRVLLFVKPFDVYPPRPLAAAASSPPPPPPPLRVSNP 40
>06_03_1310 + 29238644-29240260
Length = 538
Score = 28.7 bits (61), Expect = 6.7
Identities = 27/80 (33%), Positives = 30/80 (37%), Gaps = 8/80 (10%)
Frame = +2
Query: 485 AGHPFILSPLLLAVSPLCIXPP------SPWRSRL--HQPRSSNPPIPYTNPPQXLTXIS 640
A HPF S +P P +P RS L H P PP P PP S
Sbjct: 351 AAHPFDCSKAQCQATPPTTRRPGGRTPLAPHRSPLPHHMPPRRTPPTP---PPPSSPTPS 407
Query: 641 IXPPEXPTXNEFXPXX*XPP 700
PP PT +E P PP
Sbjct: 408 HLPPPPPTYSE-SPKSSMPP 426
>06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797
Length = 216
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +2
Query: 530 PLCIXPPSPWRSRLHQPRSSNPPIPYTNPP 619
P C+ PP P + L P P P +PP
Sbjct: 54 PYCVYPPPPTKPALPAPLPPTPASPGDSPP 83
>01_01_0761 - 5874953-5876803
Length = 616
Score = 28.7 bits (61), Expect = 6.7
Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Frame = +2
Query: 500 ILSPLLLAVSPLCIXPPSPWRSRLHQPR------SSNPPIPYTNPPQXLTXISIXPPEXP 661
+L LLL V+PL I SP + RL + PP P P T + P P
Sbjct: 9 VLFLLLLVVTPLPISIASPLKLRLSASEVAALEAHAPPPPPPPPPDTPTTYFEVDRPHRP 68
Query: 662 TXNEFXPXX*XPPLVIKRLHSXYFNPPPXT 751
F P L++ + PP T
Sbjct: 69 PPGSFGP---CSTLLLSHSFGFTYTLPPVT 95
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 545 PPSPWRSRLHQPRSSNPPIPYTNPPQXLTXISIXPPEXPTXNEFXPXX*XPP 700
PP+P + P S PP+ +PP + S PP P + P PP
Sbjct: 696 PPAP-EGHMPSPPKSTPPVE-KSPPTPESEASSPPPPAPEGHTPSPPKSSPP 745
>10_03_0023 - 7151465-7152111,7152222-7152405
Length = 276
Score = 28.3 bits (60), Expect = 8.9
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Frame = +2
Query: 494 PFILSPLLLAVSPLCIXPP---SPWRSRLHQPRSS----NPPIPYTNPPQXLTXISIXPP 652
P ++ P+ SP I PP P S L P NPP P PP L + + PP
Sbjct: 197 PSLVPPVFPTPSPPSILPPLTPQPPPSSLIPPVLPLPLLNPPPPPPPPPSLLPPVPLLPP 256
Query: 653 EXP 661
P
Sbjct: 257 LIP 259
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 8.9
Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Frame = +2
Query: 545 PPSPWRSRLHQPRSSNPPIPYTNPPQXLTXISIXPPEXP-TXNEFXPXX*XPPLVIKRLH 721
PP P +R + P + PP+P P PP P + P PP +
Sbjct: 716 PPPPPANRSNGPSAPAPPLPPPLPAAANKRNPPAPPPPPLMTGKKAPAPPPPPPQAPKPP 775
Query: 722 SXYFNPPPXTGALG 763
PPP GA G
Sbjct: 776 GTVPPPPPLHGASG 789
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,570,503
Number of Sequences: 37544
Number of extensions: 496110
Number of successful extensions: 1435
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1403
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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