Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_M13
         (907 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK025837-1|BAB15254.1|  616|Homo sapiens protein ( Homo sapiens ...    33   1.1  
AB209373-1|BAD92610.1|  410|Homo sapiens CS0DA006YC23 variant pr...    31   7.6  

>AK025837-1|BAB15254.1|  616|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22184 fis, clone HRC00983. ).
          Length = 616

 Score = 33.5 bits (73), Expect = 1.1
 Identities = 27/80 (33%), Positives = 33/80 (41%)
 Frame = +2

Query: 506 SPLLLAVSPLCIXPPSPWRSRLHQPRSSNPPIPYTNPPQXLTXISIXPPEXPTXNEFXPX 685
           +P  LA  PL + PPSP  S    P S+ PP P   PP     + + PP  P      P 
Sbjct: 187 APPSLAAPPLQV-PPSPPASPPMSP-SATPP-PQAPPPLAAPPLQV-PPSPPASPPMSPS 242

Query: 686 X*XPPLVIKRLHSXYFNPPP 745
              PP V   L +     PP
Sbjct: 243 ATPPPRVPPLLAAPPLQVPP 262


>AB209373-1|BAD92610.1|  410|Homo sapiens CS0DA006YC23 variant
           protein.
          Length = 410

 Score = 30.7 bits (66), Expect = 7.6
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
 Frame = +2

Query: 530 PLCIXPPS--PWRSRLHQPRSSNPPIPYTNPPQXLTXISIXPPE---XPTXNEFXPXX*X 694
           P    PP+  P+   ++ P    PP P   PP      +I PP     P    + P    
Sbjct: 292 PPAYGPPAHLPYHPHVYPPNP--PPPPVPPPPASFPPPAIPPPTPGYPPPPPTYNPNFPP 349

Query: 695 PPLVIKRLHSXYFNPPPXTG 754
           PP  +   H+   +PPP  G
Sbjct: 350 PPPRLPPTHAVPPHPPPGLG 369


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,743,160
Number of Sequences: 237096
Number of extensions: 2600995
Number of successful extensions: 5898
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5815
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11714809042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)