Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_M13
         (907 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070973-1|AAL48595.1|  349|Drosophila melanogaster RE07395p pro...    31   2.2  
AE014297-1913|AAF55108.2|  349|Drosophila melanogaster CG33332-P...    31   2.2  
AE014134-2065|AAN10780.1| 1267|Drosophila melanogaster CG4881-PB...    30   3.8  
AE014134-2064|AAF53096.1| 1267|Drosophila melanogaster CG4881-PA...    30   3.8  
AE014296-862|AAF47912.1|  707|Drosophila melanogaster CG13722-PA...    30   5.0  

>AY070973-1|AAL48595.1|  349|Drosophila melanogaster RE07395p
           protein.
          Length = 349

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 560 RSRLHQPRSSNPPIPYTNPPQXLTXISIXPPEXPTXNE 673
           + +        PP+PYT PP     I+  PP+  T NE
Sbjct: 49  KEKKRSKHEEEPPVPYTQPPH---LINASPPDVATNNE 83


>AE014297-1913|AAF55108.2|  349|Drosophila melanogaster CG33332-PA
           protein.
          Length = 349

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 560 RSRLHQPRSSNPPIPYTNPPQXLTXISIXPPEXPTXNE 673
           + +        PP+PYT PP     I+  PP+  T NE
Sbjct: 49  KEKKRSKHEEEPPVPYTQPPH---LINASPPDVATNNE 83


>AE014134-2065|AAN10780.1| 1267|Drosophila melanogaster CG4881-PB,
            isoform B protein.
          Length = 1267

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +2

Query: 464  HS*XSQC--AGHPFILSPLLLAVSPLCIXPPSPWRSRLHQ--PRSSNPPIPYTNPP 619
            H+   QC  AG P+  + L L  +     PPS   S   +  P SSNPP P  NPP
Sbjct: 903  HAQRPQCSDAGSPYG-AKLTLNPNLFAKKPPSSSSSSSGEKLPESSNPPFPAENPP 957


>AE014134-2064|AAF53096.1| 1267|Drosophila melanogaster CG4881-PA,
            isoform A protein.
          Length = 1267

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +2

Query: 464  HS*XSQC--AGHPFILSPLLLAVSPLCIXPPSPWRSRLHQ--PRSSNPPIPYTNPP 619
            H+   QC  AG P+  + L L  +     PPS   S   +  P SSNPP P  NPP
Sbjct: 903  HAQRPQCSDAGSPYG-AKLTLNPNLFAKKPPSSSSSSSGEKLPESSNPPFPAENPP 957


>AE014296-862|AAF47912.1|  707|Drosophila melanogaster CG13722-PA
           protein.
          Length = 707

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
 Frame = +2

Query: 545 PPSPWRSRLHQPRSSNPPIP-YTNPPQXLTXISIXPPEXP-TXNEFXPXX*XPPLVIKRL 718
           PP P    L  P+ +NPP P Y  PPQ  +      P  P       P    PP+V    
Sbjct: 397 PPQP--KYLPPPKPTNPPQPKYLPPPQPKSGYDYPKPAIPFPPPTNPPQKYLPPVVPTSP 454

Query: 719 HSXYFNPPP 745
               + PPP
Sbjct: 455 PQPKYLPPP 463



 Score = 29.9 bits (64), Expect = 5.0
 Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
 Frame = +2

Query: 530 PLCIXPPSPWRSRLHQPRSSNPPIPYTNPPQXLTXISIXPPEXPTXNEFXPXX*XPPLVI 709
           P  + PP P +S    P+ + P  P TNPPQ        PP  PT +   P    PP   
Sbjct: 414 PKYLPPPQP-KSGYDYPKPAIPFPPPTNPPQ-----KYLPPVVPT-SPPQPKYLPPPKPT 466

Query: 710 KRLHSXYFNPP-PXTG 754
                 Y  PP P +G
Sbjct: 467 NPPQPKYLPPPQPKSG 482


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,748,656
Number of Sequences: 53049
Number of extensions: 788214
Number of successful extensions: 1956
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1934
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4423507848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)