Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_M13
         (907 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           27   0.31 
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           27   0.31 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   8.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.8  

>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = +3

Query: 507 RHYY-WRSRPYASXHPPPG--DLGYINP 581
           RH Y ++ +PY   H PPG  DL Y+ P
Sbjct: 55  RHRYNFQLKPYNPEHKPPGPKDLVYLEP 82


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = +3

Query: 507 RHYY-WRSRPYASXHPPPG--DLGYINP 581
           RH Y ++ +PY   H PPG  DL Y+ P
Sbjct: 56  RHRYNFQLKPYNPEHKPPGPKDLVYLEP 83


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 427 QSQLTFVGLLLTSQLXESMCWSPLH 501
           QS+ T   +L    +   +CW+P H
Sbjct: 253 QSRKTITRMLSAVVITFFICWAPFH 277


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 423  IPVTVDLCWTTADVTVEXVNVLVTPSS 503
            +P TV  C T  DV     ++ V  SS
Sbjct: 1200 VPTTVTYCQTEEDVPGSPADIKVVVSS 1226


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 423  IPVTVDLCWTTADVTVEXVNVLVTPSS 503
            +P TV  C T  DV     ++ V  SS
Sbjct: 1196 VPTTVTYCQTEEDVPGSPADIKVVVSS 1222


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,751
Number of Sequences: 438
Number of extensions: 4901
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)