Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_M10
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.16c |||aromatic ring-opening dioxygenase |Schizosacchar...    29   1.1  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    28   1.4  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.2  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    27   4.3  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.9  
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac...    25   9.9  

>SPBC1709.16c |||aromatic ring-opening dioxygenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 285

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 677 PYNLEQHPREXHYGVSLYVGQGYG 606
           PY  + HPRE H+ V LYV  G G
Sbjct: 240 PYFRKAHPREEHF-VPLYVAAGLG 262


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
 Frame = +3

Query: 129 DLRQKLYALXDELWRNVSDPMWRQSDLGGDVELTKAFVALDELIQAVPRSRRPPLNSW-I 305
           DL++ L  L DE W N+ +P              + F A  + + A  R+    ++++ +
Sbjct: 132 DLKRGLSTLTDEDWNNIPEPGDLTRKKRTKQPRRERFYATSDFVLASARNENQAISNFAV 191

Query: 306 WTNAIXKMQIIDGHCKYFAEFARTQSRPGAVPAPVREWMDLTEAVLMDPKSSVTNSMNKL 485
            T A  +   ++G    F E    + +   +    +   +LT    +DPK  +T S+N +
Sbjct: 192 DTQAGTETPDMNGTKTNFVEIGAARDKVLGIKL-AQASSNLTSPSTIDPKGYLT-SLNSM 249


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 411  REWMDLTEAVLMDPKSSVTNSMNKLGELMSHGEAVTYRLVMLXE 542
            R  MD  + +L+D K++VTN  N +G  +    A T  L  L E
Sbjct: 1096 RMTMDYCKRMLLDRKANVTNVFNTIGLPIHQQMAATIFLENLKE 1139


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 354 YFAEFARTQSRPGAVPAPVREWMDLTE 434
           YF +  R QS P  +P PV   + LT+
Sbjct: 291 YFPQHRRFQSAPAPIPRPVSTLIPLTQ 317


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 457 DLGSISTASVRSIHSRTGAGTAPGRDCVLANSAKY 353
           DL  I+ + + ++ S T    A   +CVL+N  KY
Sbjct: 415 DLSDIADSILLNMFSPTSKNRATNINCVLSNLGKY 449


>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 499 LISSPSLFIEFVTDDLGSISTASVRSI 419
           +I+S +LF+ F+T   G I+T + R I
Sbjct: 44  MINSATLFVSFLTSASGEIATNNNRKI 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,718
Number of Sequences: 5004
Number of extensions: 54852
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)