Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_M10
         (829 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   3.1  
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    29   3.1  
U50301-2|AAM29675.1|  362|Caenorhabditis elegans Hypothetical pr...    28   7.1  
L23649-3|AAA27909.2|  601|Caenorhabditis elegans Tyrosinase prot...    28   7.1  

>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/42 (33%), Positives = 16/42 (38%)
 Frame = +2

Query: 515 HLPPRHATXGRHGRVHVAXVPASXNLRHLQHHSPGRHKGIRH 640
           H    H   G HG  H A    + +  H  HH  G H G  H
Sbjct: 662 HSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAHHGAHH 703


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 25/78 (32%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
 Frame = +2

Query: 395 CSGASSGMDGPHRSGADGPQVVCYELDEQTGRADEPRRGCHLPPRHATXGRHG-RVHVAX 571
           CSG+  G  G    G  G +          GR      G H   RH   GRHG R     
Sbjct: 294 CSGSPRGRHGHGGHGGHGSRS-----GSPGGRHGHGGSGHHRGGRHGGHGRHGSRSGSPG 348

Query: 572 VPASXNLRHLQHHSPGRH 625
                  RH   H PGRH
Sbjct: 349 GRHGHGGRHGPPHCPGRH 366



 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
 Frame = +2

Query: 515 HLPPRHATXGRHGRVHVAXVPASXNLRHLQHH---SPGRHKGIRHN 643
           H P  H   GRHG  H           H  HH   SP RH    H+
Sbjct: 374 HSPRGHGHGGRHGPPHCPGRHGHHGPPHHHHHDGRSPSRHGHHHHH 419


>U50301-2|AAM29675.1|  362|Caenorhabditis elegans Hypothetical
           protein F20D6.5 protein.
          Length = 362

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -1

Query: 196 LHIGSDTF--LHNSSXKAYSFCRKSSTEH 116
           L IG DTF  LHN+   AY+F +K S ++
Sbjct: 62  LFIGDDTFCKLHNTEVDAYTFLQKFSDKN 90


>L23649-3|AAA27909.2|  601|Caenorhabditis elegans Tyrosinase protein
           1 protein.
          Length = 601

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 107 GDRYCEQRNERCESHCDTVCGWWN 36
           G  +C +R +    +C   CGW N
Sbjct: 535 GQNFCTRRRQWMAENCQATCGWCN 558


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,752,117
Number of Sequences: 27780
Number of extensions: 337131
Number of successful extensions: 924
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)