Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_M09
(830 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 29 0.81
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 27 4.3
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 26 5.7
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 26 5.7
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 7.5
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 7.5
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 26 7.5
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom... 25 10.0
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ... 25 10.0
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 25 10.0
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 29.1 bits (62), Expect = 0.81
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -1
Query: 188 RPADGSAKR--RDHASSTDRRDWSLRANLTFFFFKNVERFTILRVILAQG 45
+PADG+ + S + SL +N TFF + V RF++ VI A G
Sbjct: 328 KPADGADNEDSKSLVSHISSSNTSLFSNFTFFLSREVPRFSLEFVIRAFG 377
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 332 VGSLPXILCKYRPKQPWPVNICVSRKVRHPRSRP 231
+ S P L K+R + P IC RKV+ R +P
Sbjct: 1 MSSSPPALKKFRKRSPKSCLICRRRKVKCDRQQP 34
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 26.2 bits (55), Expect = 5.7
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -3
Query: 570 ALPLSXRRLLVRDGGLAEVEHRLXGRIAAEHRSHDARQREVLSNDRD 430
++PL ++L D AE L A EHRS+ +++ ND D
Sbjct: 146 SMPLWLEKILRLDEESAERRRVLQAERAKEHRSNSNDKQKSSDNDED 192
>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -1
Query: 794 SLP-GRNAIHRXPGRFIXSTAAR*SXGSAPXGLTPSGRPLTF 672
S+P G N+I++ P + + ++ ++P GL P+GRP F
Sbjct: 397 SMPKGPNSIYKIPSASMVNLSS--PLVTSPSGLNPTGRPSRF 436
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 69 FACHPCAGGHANLLCIVPNFS 7
F C GG CI+PNFS
Sbjct: 653 FLCLWVQGGRVRAYCIIPNFS 673
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/55 (23%), Positives = 20/55 (36%)
Frame = -1
Query: 266 VSRKVRHPRSRPTQSARTGRTASTVRRPADGSAKRRDHASSTDRRDWSLRANLTF 102
VS H + G TA+ ADG A+ + ++ W R +F
Sbjct: 588 VSATEEHAAGTTKPAPAAGATATAENETADGKAQTATDGEAAPKKSWFKRMKKSF 642
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 25.8 bits (54), Expect = 7.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 318 GYLVQVPAKTTMAGQHLRQPEGEASAVAAHPVREDRTDRLDGTEA 184
G L++V A QH+++ E S+VA V R DRL A
Sbjct: 718 GTLLRVDYGKAYATQHVKEIFEELSSVADRVVSSTRKDRLASLNA 762
>SPCC330.10 |pcm1||mRNA capping
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 389
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = -1
Query: 248 HPRSRPTQSARTGRTASTVRRPADGSAKRRDHASSTD 138
H PT++ R R + + R + +RRD+ + D
Sbjct: 38 HEEQPPTENRRYARPTAQMNRVIEQQPRRRDYFQNND 74
>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 454
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = -1
Query: 191 RRPADGSAKRRDHASSTDRRDWSLRANLTFFFFKNVERF 75
+ P+ S K + + + + WS+ + F F N+E+F
Sbjct: 70 KSPSTNSTKLKSAETYSSKNKWSMDCDEEFDFAANLEKF 108
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 10.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 591 PSPSSRGPEAGIRPYVPAPV 650
P+ + RG E + PY+P PV
Sbjct: 348 PNEAGRGDERRVIPYMPGPV 367
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,580,343
Number of Sequences: 5004
Number of extensions: 41599
Number of successful extensions: 141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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