Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_M09
(830 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0140 + 17638335-17638583,17638843-17639061,17639206-176394... 34 0.12
05_02_0012 - 5575574-5575849,5575889-5575954,5576103-5576926,557... 32 0.49
06_01_0778 + 5816588-5816885,5817554-5817615,5818764-5818905,581... 31 1.5
09_04_0379 - 17094540-17094868,17095354-17095717 30 2.6
06_03_1501 + 30612643-30613310,30613396-30613501,30613732-306139... 29 3.4
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161... 29 3.4
03_01_0452 - 3465140-3466404,3466481-3467056,3467150-3467495 29 3.4
01_04_0012 - 15075505-15075636,15075719-15075784 29 3.4
10_05_0020 - 8094412-8094653,8094692-8095017,8095632-8095798 29 4.5
01_06_0752 + 31704071-31704787 29 4.5
07_03_1285 + 25477542-25477625,25477776-25477832,25477973-254780... 29 6.0
07_03_1162 + 24437396-24438652 29 6.0
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365... 29 6.0
07_01_0217 + 1620625-1621419,1621982-1622152,1622581-1622865,162... 29 6.0
06_03_0840 + 25293314-25293838 29 6.0
04_04_1019 + 30166514-30166585,30167207-30167841,30168505-301686... 29 6.0
04_01_0020 + 307110-307809,308412-308476,309245-309544 29 6.0
06_01_0149 + 1124427-1126805 28 7.9
>03_04_0140 +
17638335-17638583,17638843-17639061,17639206-17639443,
17640614-17640809,17640888-17640942,17641495-17641645,
17642501-17642809,17642950-17643215,17643311-17644237,
17644386-17644712
Length = 978
Score = 34.3 bits (75), Expect = 0.12
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +3
Query: 423 RPRRGHWRGPLAAARRGYDARQRCVLXGDARLLRVHHLAQGGGGXREGELFP 578
RP + P+ AA G AR+ L AR R L++GGGG R+G + P
Sbjct: 12 RPAMAAAQAPVVAAAWGVGARRGAALSSSARC-RALRLSRGGGGGRDGWVPP 62
>05_02_0012 -
5575574-5575849,5575889-5575954,5576103-5576926,
5577333-5577405,5577936-5577983
Length = 428
Score = 32.3 bits (70), Expect = 0.49
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 408 RRATRRPRRGHWRGPLAAARRGYDARQRCVLXGD--ARLLRVHHLAQGGGGXREG 566
R A R RG G RRG A + V+ + AR LR++ A GGGG G
Sbjct: 133 RAAIRAQGRGRCSGEARCGRRGEGADRAAVMVKERIARALRLYKEAAGGGGSGGG 187
>06_01_0778 +
5816588-5816885,5817554-5817615,5818764-5818905,
5819969-5820064,5820147-5820266,5820401-5820663,
5821507-5821617
Length = 363
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -3
Query: 618 PPAPGSTATDRCGKGRALPLSXRRLLVRDGG 526
PP P ++T CG A PL RR VR+ G
Sbjct: 65 PPVPRGSSTGACGSADAEPLQLRRGEVREWG 95
>09_04_0379 - 17094540-17094868,17095354-17095717
Length = 230
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 275 NICVSRKVRHPRSRPTQSARTGRTASTVRRPADG 174
N + R++RH +PT AR G + +PA G
Sbjct: 176 NRAIPRRIRHDLEKPTDGARAGGRKRGIGKPAFG 209
>06_03_1501 +
30612643-30613310,30613396-30613501,30613732-30613934,
30614211-30614502
Length = 422
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 190 RTVEAVRPVLADWVGRDRGCLTFRLTQMLTGHGCFGRYLHKIXGREPTA 336
+ VE + LADWV + G T TG C+G L + ++P+A
Sbjct: 190 KNVEMLSEHLADWVSEEDGKKIVFHTFSNTGWLCYGVILENLQRQDPSA 238
>04_03_1049 +
22015053-22015083,22015770-22015885,22016013-22016108,
22016229-22016285,22016468-22016620,22016754-22016838,
22017097-22017187,22017324-22017488,22017813-22017932,
22018020-22018104,22018234-22018402,22019055-22019173,
22019250-22019440,22019746-22019957,22020905-22021500,
22022538-22022658,22023439-22023868,22024412-22024797,
22024976-22025071,22025380-22025432,22026915-22027061,
22027139-22027309,22027880-22027962,22028049-22028247,
22028668-22028789,22029752-22029818,22029960-22030010,
22030768-22031001,22031263-22031451,22032455-22032646,
22032742-22032936
Length = 1673
Score = 29.5 bits (63), Expect = 3.4
Identities = 28/85 (32%), Positives = 34/85 (40%)
Frame = +3
Query: 408 RRATRRPRRGHWRGPLAAARRGYDARQRCVLXGDARLLRVHHLAQGGGGXREGELFPFRT 587
RR + RR WR A RRG A QR G+A R GG R GE R
Sbjct: 590 RRGGKERRRPSWRALAANRRRGEAANQR---RGEAATQR-GGSDPAGGLRRRGEAAK-RR 644
Query: 588 DPSPSSRGPEAGIRPYVPAPVRWRS 662
++R E +R RWR+
Sbjct: 645 HGEAANRWREEAVRRGGDPSERWRT 669
>03_01_0452 - 3465140-3466404,3466481-3467056,3467150-3467495
Length = 728
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = +1
Query: 226 WVGRDRGCLTFRLTQMLTGHGCFGRYLHKIXGREPTAQCHHCADRDE----DDTAERTLA 393
W R L RL ++L G+ F L + +Q +C ++ DD ER L
Sbjct: 50 WSLRPPCILCSRLDRLLHGNTWFSEDLICAAHKLEISQLEYCQSHNKLAHSDDLCERCLL 109
Query: 394 RCSGFDE 414
C+G DE
Sbjct: 110 SCAGLDE 116
>01_04_0012 - 15075505-15075636,15075719-15075784
Length = 65
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 411 RATRRPRRGHWRGPLAAARRGYDARQRC 494
R RRPR H R P+A R+G R+ C
Sbjct: 11 RPERRPRHHHSRHPVATNRQGLPRRRPC 38
>10_05_0020 - 8094412-8094653,8094692-8095017,8095632-8095798
Length = 244
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 355 DRDEDDTAERTLARCSGF 408
D+D+DD AE T ARC G+
Sbjct: 182 DQDDDDRAEATAARCPGW 199
>01_06_0752 + 31704071-31704787
Length = 238
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -3
Query: 636 RTGVFPPPAPGSTATDRC 583
R GV PPP P STA RC
Sbjct: 159 RAGVEPPPPPPSTAAARC 176
>07_03_1285 +
25477542-25477625,25477776-25477832,25477973-25478040,
25478187-25478391,25478429-25478586,25478865-25478940,
25479065-25479124,25479186-25479236,25479663-25479741,
25480183-25480271
Length = 308
Score = 28.7 bits (61), Expect = 6.0
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Frame = -1
Query: 338 CAVGSLPXILCKYRPKQPWPVNICVSRKVRHPR------SRPTQSARTGRTASTVRRPAD 177
C G +P +C+ +P PV CV H + S QS + +ST ++ A+
Sbjct: 118 CKCG-MPLCICEAPKPEPVPVKFCVPPPNEHMQQSISTTSSSAQSNPRPKKSSTNQQSAE 176
Query: 176 GSAKRRDHASSTD 138
S K+ SS++
Sbjct: 177 SSVKKASATSSSN 189
>07_03_1162 + 24437396-24438652
Length = 418
Score = 28.7 bits (61), Expect = 6.0
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +3
Query: 450 PLAAARRGYDARQRCV-LXGDARLLRVHHLAQGGGGXREGELFPFRTDPSPSSRGPEAGI 626
P A G A R + L G R+ H GGG EGE FP+ P P +
Sbjct: 8 PRRALAEGAGALGRSLPLVGGGSWTRLVH-GGGGGSEAEGEEFPYADVPRPGRKWER--- 63
Query: 627 RPYV 638
+PYV
Sbjct: 64 KPYV 67
>07_03_0111 +
13535912-13535972,13536081-13536142,13536418-13536510,
13537577-13537649,13537876-13538265,13538337-13538404,
13539334-13539375,13540211-13540735,13540817-13540974,
13541078-13541636,13542438-13542500,13542579-13542680,
13542779-13543096,13543175-13543267,13543489-13543590,
13543678-13543782,13544190-13544323,13545097-13545280,
13545701-13545832,13546215-13546327,13546468-13546558,
13547138-13549339
Length = 1889
Score = 28.7 bits (61), Expect = 6.0
Identities = 20/67 (29%), Positives = 25/67 (37%)
Frame = -3
Query: 696 PXRSPLDLHRGETAT*QGPXRTGVFPPPAPGSTATDRCGKGRALPLSXRRLLVRDGGLAE 517
P + P G A G RTG PPP+P A D K A + AE
Sbjct: 140 PAKEPSGSKAGSAAA-TGGRRTGS-PPPSPAPVAKDAATKDDAAAAAAAAAAKESSASAE 197
Query: 516 VEHRLXG 496
+E + G
Sbjct: 198 LEAEMSG 204
>07_01_0217 +
1620625-1621419,1621982-1622152,1622581-1622865,
1623113-1623262
Length = 466
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -3
Query: 273 HLRQPEGEASAVAAHPVREDRTDRLDGTEAGRRVRQAARPRLQ 145
HLR P G A A A + + R+DG E GR V PRL+
Sbjct: 106 HLRPPPGGAFAALATATIQ--SCRVDGGELGRLVSSPQCPRLE 146
>06_03_0840 + 25293314-25293838
Length = 174
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 456 AAARRGYDARQRCVLXGDARLLRVH-HLAQGGGGXREGE 569
AAAR AR+ L +AR LR L GGGG +GE
Sbjct: 117 AAARHAQMARENARLAEEARALRERLPLRGGGGGGGDGE 155
>04_04_1019 +
30166514-30166585,30167207-30167841,30168505-30168645,
30169604-30170300
Length = 514
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 648 QGPXRTGVFPPPAPGSTATDRCGKGRA 568
Q P +FPPP S+ TD CG G A
Sbjct: 62 QLPAEPMLFPPPPSLSSTTDGCGAGGA 88
>04_01_0020 + 307110-307809,308412-308476,309245-309544
Length = 354
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +3
Query: 594 SPSSRGPEAGIRPYVPAPV-RW 656
+P+ G EA +R Y PAPV RW
Sbjct: 84 APTDTGGEAAVRRYTPAPVCRW 105
>06_01_0149 + 1124427-1126805
Length = 792
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 288 LFWPVLAQDXRKGTDGAVPSLRGPRRG*HSGTHAGALLWI 407
L W +L + RK +GA+ RG + + THA +++W+
Sbjct: 120 LIWMLLVELLRKKLEGALVITRGTQGYSNIVTHAASVVWM 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,699,410
Number of Sequences: 37544
Number of extensions: 444242
Number of successful extensions: 2001
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2000
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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