Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_M09
(830 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC008134-1|AAH08134.2| 240|Homo sapiens C14orf121 protein protein. 35 0.42
DQ060036-1|AAY43130.1| 900|Homo sapiens polymerase (DNA directe... 31 5.1
AY136549-1|AAN52116.1| 900|Homo sapiens DNA polymerase N protein. 31 5.1
AL158068-2|CAM20461.1| 900|Homo sapiens polymerase (DNA directe... 31 5.1
AL136360-1|CAM16854.1| 900|Homo sapiens polymerase (DNA directe... 31 5.1
AK022471-1|BAB14048.1| 129|Homo sapiens protein ( Homo sapiens ... 31 6.8
U75308-1|AAC50901.1| 947|Homo sapiens TBP-associated factor pro... 30 8.9
>BC008134-1|AAH08134.2| 240|Homo sapiens C14orf121 protein protein.
Length = 240
Score = 34.7 bits (76), Expect = 0.42
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +3
Query: 537 AQGGGGXREGELFPFRTDPSPSSRGPEAGIRPYVPAPV---RWRSPP 668
+Q G +EG LFP RT P+ +++ + + P+ P PV R R PP
Sbjct: 112 SQDGEEEKEGTLFPERTLPARNAKLQDPALAPWPPKPVAVPRGRQPP 158
>DQ060036-1|AAY43130.1| 900|Homo sapiens polymerase (DNA directed)
nu protein.
Length = 900
Score = 31.1 bits (67), Expect = 5.1
Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 7/100 (7%)
Frame = +1
Query: 241 RGCLTFRLTQMLTGHGC-----FGRYLHKIXGREPTA--QCHHCADRDEDDTAERTLARC 399
RG + Q GHGC G L +P Q H A D++ A + AR
Sbjct: 245 RGIVVLVKRQAEGGHGCPDAPACGPVLEGFVSDDPCIYIQIEHSAIWDQEQEAHQQFARN 304
Query: 400 SGFDEQRAALVAVIGEDLSLPRVVATMLGSDASXKAMLDF 519
F + + R+V G+D S K + DF
Sbjct: 305 VLFQTMKCKCPVICFNAKDFVRIVLQFFGNDGSWKHVADF 344
>AY136549-1|AAN52116.1| 900|Homo sapiens DNA polymerase N protein.
Length = 900
Score = 31.1 bits (67), Expect = 5.1
Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 7/100 (7%)
Frame = +1
Query: 241 RGCLTFRLTQMLTGHGC-----FGRYLHKIXGREPTA--QCHHCADRDEDDTAERTLARC 399
RG + Q GHGC G L +P Q H A D++ A + AR
Sbjct: 245 RGIVVLVKRQAEGGHGCPDAPACGPVLEGFVSDDPCIYIQIEHSAIWDQEQEAHQQFARN 304
Query: 400 SGFDEQRAALVAVIGEDLSLPRVVATMLGSDASXKAMLDF 519
F + + R+V G+D S K + DF
Sbjct: 305 VLFQTMKCKCPVICFNAKDFVRIVLQFFGNDGSWKHVADF 344
>AL158068-2|CAM20461.1| 900|Homo sapiens polymerase (DNA directed)
nu protein.
Length = 900
Score = 31.1 bits (67), Expect = 5.1
Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 7/100 (7%)
Frame = +1
Query: 241 RGCLTFRLTQMLTGHGC-----FGRYLHKIXGREPTA--QCHHCADRDEDDTAERTLARC 399
RG + Q GHGC G L +P Q H A D++ A + AR
Sbjct: 245 RGIVVLVKRQAEGGHGCPDAPACGPVLEGFVSDDPCIYIQIEHSAIWDQEQEAHQQFARN 304
Query: 400 SGFDEQRAALVAVIGEDLSLPRVVATMLGSDASXKAMLDF 519
F + + R+V G+D S K + DF
Sbjct: 305 VLFQTMKCKCPVICFNAKDFVRIVLQFFGNDGSWKHVADF 344
>AL136360-1|CAM16854.1| 900|Homo sapiens polymerase (DNA directed)
nu protein.
Length = 900
Score = 31.1 bits (67), Expect = 5.1
Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 7/100 (7%)
Frame = +1
Query: 241 RGCLTFRLTQMLTGHGC-----FGRYLHKIXGREPTA--QCHHCADRDEDDTAERTLARC 399
RG + Q GHGC G L +P Q H A D++ A + AR
Sbjct: 245 RGIVVLVKRQAEGGHGCPDAPACGPVLEGFVSDDPCIYIQIEHSAIWDQEQEAHQQFARN 304
Query: 400 SGFDEQRAALVAVIGEDLSLPRVVATMLGSDASXKAMLDF 519
F + + R+V G+D S K + DF
Sbjct: 305 VLFQTMKCKCPVICFNAKDFVRIVLQFFGNDGSWKHVADF 344
>AK022471-1|BAB14048.1| 129|Homo sapiens protein ( Homo sapiens
cDNA FLJ12409 fis, clone MAMMA1002895. ).
Length = 129
Score = 30.7 bits (66), Expect = 6.8
Identities = 30/90 (33%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = +3
Query: 318 RKGTDGAVPSLRGPRRG*HSGTHAGALLWIRRATRRP-RRGHWRGPLAAARRGYDARQRC 494
R GT + S RG RR G AG+ +R RRP G + P +R + C
Sbjct: 27 RPGTGASGLSFRGQRRPDRPGPGAGSAPNVR--ARRPGASGPGQVPPPLEKRKFLCS--C 82
Query: 495 VLXGDARLLRVHHLAQGGGGXREGELFPFR 584
L R+LRV+ G G R G FR
Sbjct: 83 DLAPAVRVLRVNWSPGSGAGRRRGRKACFR 112
>U75308-1|AAC50901.1| 947|Homo sapiens TBP-associated factor
protein.
Length = 947
Score = 30.3 bits (65), Expect = 8.9
Identities = 30/94 (31%), Positives = 30/94 (31%)
Frame = +3
Query: 387 AGALLWIRRATRRPRRGHWRGPLAAARRGYDARQRCVLXGDARLLRVHHLAQGGGGXREG 566
AG RA P G GP G A Q L G A LL HH A
Sbjct: 57 AGPAALAARAGPGPGPGPGPGPGPGKPAGPGAAQ--TLNGSAALLNSHHAAAPAVSLVNN 114
Query: 567 ELFPFRTDPSPSSRGPEAGIRPYVPAPVRWRSPP 668
P P P P A P PAP PP
Sbjct: 115 G--PAALLPLPKPAAPAAAPPPPPPAPATLARPP 146
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,166,019
Number of Sequences: 237096
Number of extensions: 2051801
Number of successful extensions: 6738
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6727
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10426655866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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