Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_M09
(830 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 33 0.33
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 33 0.33
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 31 0.77
Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical pr... 29 3.1
U44902-1|AAA93318.1| 483|Caenorhabditis elegans serine/threonin... 29 5.4
AC024770-7|AAP13756.1| 411|Caenorhabditis elegans Checkpoint ki... 29 5.4
AC024770-6|AAF59485.2| 503|Caenorhabditis elegans Checkpoint ki... 29 5.4
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 32.7 bits (71), Expect = 0.33
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = +3
Query: 537 AQGGGGXREGELFPFRTDPSPSSRGPEAGIRPYVP 641
A GGGG L P R P+PS+ PE RP VP
Sbjct: 801 APGGGGGMYPPLIPTRV-PTPSNGAPEIPARPQVP 834
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 32.7 bits (71), Expect = 0.33
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = +3
Query: 537 AQGGGGXREGELFPFRTDPSPSSRGPEAGIRPYVP 641
A GGGG L P R P+PS+ PE RP VP
Sbjct: 801 APGGGGGMYPPLIPTRV-PTPSNGAPEIPARPQVP 834
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 31.5 bits (68), Expect = 0.77
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -1
Query: 251 RHPRSRPTQSARTGRTASTVRR--PADGSAKRRDHASSTDRRDWSLRANLT 105
R RSR + +R R+ S+ R P S +R + S + +RD LRAN++
Sbjct: 104 RRSRSRDRKRSRRSRSRSSSRSRSPVRESRRRSESRSPSPKRDLQLRANIS 154
>Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical
protein C34B7.4 protein.
Length = 617
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = -3
Query: 306 QVPAKTTMAGQHLRQPEGEASAVAAHPVREDRTDRLDGTEAGRRVRQAARPRLQHG 139
Q P+ ++ ++LR+P + + ++ P+ + +RLD TE R L+HG
Sbjct: 33 QTPSSSSSKRKNLRKPSTDDTPSSSEPL--SKKNRLDSTETAEEDNTRRRRTLKHG 86
>Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = -1
Query: 257 KVRHPRSRPTQSARTGRTASTVRRPADGSAK-RRDHASSTDRRDWSLRANLTFFFFKNVE 81
++ HP P +S+ ++++ RRP + S++ SS+ RRD+S + + F+N
Sbjct: 304 RMSHPMGPPRRSSGAPPSSASNRRPVESSSRGPPPPPSSSSRRDYSHQGDRNDDRFENHR 363
Query: 80 RFTI 69
R I
Sbjct: 364 RGVI 367
>Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = -1
Query: 257 KVRHPRSRPTQSARTGRTASTVRRPADGSAK-RRDHASSTDRRDWSLRANLTFFFFKNVE 81
++ HP P +S+ ++++ RRP + S++ SS+ RRD+S + + F+N
Sbjct: 304 RMSHPMGPPRRSSGAPPSSASNRRPVESSSRGPPPPPSSSSRRDYSHQGDRNDDRFENHR 363
Query: 80 RFTI 69
R I
Sbjct: 364 RGVI 367
>U44902-1|AAA93318.1| 483|Caenorhabditis elegans serine/threonine
kinase protein.
Length = 483
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -1
Query: 257 KVRHPRSRPTQSARTGRTASTVRRPADGSAKRRDHASSTDRRDWSLRANLTF 102
+V P RP + AR T + A+ SAKRR + ++ + R N +F
Sbjct: 292 QVETPNGRPLKRARNNDENITCTQQAECSAKRRHLETPNEKSTLAERQNASF 343
>AC024770-7|AAP13756.1| 411|Caenorhabditis elegans Checkpoint
kinase protein 1, isoformb protein.
Length = 411
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -1
Query: 257 KVRHPRSRPTQSARTGRTASTVRRPADGSAKRRDHASSTDRRDWSLRANLTF 102
+V P RP + AR T + A+ SAKRR + ++ + R N +F
Sbjct: 200 QVETPNGRPLKRARNNDENITCTQQAECSAKRRHLETPNEKSTLAERQNASF 251
>AC024770-6|AAF59485.2| 503|Caenorhabditis elegans Checkpoint
kinase protein 1, isoforma protein.
Length = 503
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -1
Query: 257 KVRHPRSRPTQSARTGRTASTVRRPADGSAKRRDHASSTDRRDWSLRANLTF 102
+V P RP + AR T + A+ SAKRR + ++ + R N +F
Sbjct: 292 QVETPNGRPLKRARNNDENITCTQQAECSAKRRHLETPNEKSTLAERQNASF 343
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,141,638
Number of Sequences: 27780
Number of extensions: 282166
Number of successful extensions: 903
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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