Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_M08
         (897 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029...    33   0.31 
12_01_0524 - 4167867-4168445                                           29   6.6  
04_01_0530 - 6928528-6929500,6929514-6930964                           28   8.8  
03_02_0111 + 5688649-5688942                                           28   8.8  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   8.8  

>05_03_0366 -
           13102147-13102281,13102560-13102739,13102791-13102992,
           13104385-13104575
          Length = 235

 Score = 33.1 bits (72), Expect = 0.31
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -3

Query: 310 HQPSAAAPLPCVPXQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 146
           H P AAA  P VP +    P  L +   S GG GL   S S +  G  + D G+GG
Sbjct: 7   HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61


>12_01_0524 - 4167867-4168445
          Length = 192

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 22/72 (30%), Positives = 31/72 (43%)
 Frame = -3

Query: 307 QPSAAAPLPCVPXQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 128
           QPS+AA  P     +    +   +  YSH G    +   S + G  +   G GGG P V 
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160

Query: 127 CEERVDHEGQ*C 92
            EE  + E + C
Sbjct: 161 VEEVEEEEEKEC 172


>04_01_0530 - 6928528-6929500,6929514-6930964
          Length = 807

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +1

Query: 43  VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 183
           +SP+LCY+ C   RK+       +L+  +  SGLPP++   S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515


>03_02_0111 + 5688649-5688942
          Length = 97

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 285 SGAAALGWCPRNACGGLTWYC*TRLQPPPGTTLSAPVYLITAPSPX*SAWT 437
           + AAA    P     G  +   +   PPP   L+ P+Y + AP    SA+T
Sbjct: 33  TAAAAAATGPHRRGRGRCYCSASDAPPPPPYVLTTPLYYVNAPPHMGSAYT 83


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 392 GRGERSPRRWLQPRLAVPRQASTSVPRTP 306
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,781,356
Number of Sequences: 37544
Number of extensions: 490160
Number of successful extensions: 1292
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)