Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_M08
(897 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical pr... 52 7e-07
AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical ... 52 7e-07
AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical ... 52 7e-07
Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical pr... 51 1e-06
Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical pr... 48 9e-06
AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical ... 48 9e-06
AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical ... 48 9e-06
X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 46 3e-05
X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 46 3e-05
X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit... 46 3e-05
U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 46 3e-05
AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine... 46 3e-05
AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine... 46 3e-05
AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine... 46 3e-05
AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic ace... 46 4e-05
AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinate... 46 4e-05
X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic acety... 46 5e-05
U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine r... 46 5e-05
AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine... 45 8e-05
U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine r... 44 2e-04
AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical ... 44 2e-04
U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical pr... 43 3e-04
Z92837-3|CAB07402.3| 502|Caenorhabditis elegans Hypothetical pr... 43 3e-04
Z50029-2|CAA90341.3| 537|Caenorhabditis elegans Hypothetical pr... 43 3e-04
AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical... 42 5e-04
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 42 5e-04
AC006808-1|AAF60813.1| 486|Caenorhabditis elegans Hypothetical ... 42 5e-04
Z99281-1|CAB16504.2| 439|Caenorhabditis elegans Hypothetical pr... 42 6e-04
L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte upt... 42 6e-04
AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein. 42 6e-04
Z81071-1|CAB03014.2| 510|Caenorhabditis elegans Hypothetical pr... 42 8e-04
AY523513-1|AAR98635.1| 510|Caenorhabditis elegans acetylcholine... 42 8e-04
AL110490-4|CAB54450.1| 474|Caenorhabditis elegans Hypothetical ... 42 8e-04
AC084197-42|AAU87806.2| 544|Caenorhabditis elegans Acetylcholin... 41 0.001
Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical pr... 41 0.001
X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha nicot... 41 0.001
X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic acety... 41 0.001
AF047656-7|AAC05108.2| 462|Caenorhabditis elegans Ligand-gated ... 41 0.001
Z68118-7|CAA92184.2| 573|Caenorhabditis elegans Hypothetical pr... 40 0.003
Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical pr... 40 0.003
U88177-6|AAB42293.1| 446|Caenorhabditis elegans Acetylcholine r... 40 0.003
U88177-5|AAT48618.1| 515|Caenorhabditis elegans Acetylcholine r... 40 0.003
U28929-5|AAA68348.2| 438|Caenorhabditis elegans Gaba/glycine re... 40 0.003
AY523512-1|AAR98634.1| 499|Caenorhabditis elegans acetylcholine... 40 0.003
AF187013-1|AAG35183.1| 573|Caenorhabditis elegans nicotinic ace... 40 0.003
AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical ... 40 0.003
AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated... 39 0.004
Z80220-5|CAB02308.1| 493|Caenorhabditis elegans Hypothetical pr... 39 0.006
Z70266-4|CAA94206.3| 534|Caenorhabditis elegans Hypothetical pr... 39 0.006
X83888-1|CAA58765.1| 493|Caenorhabditis elegans beta-1 subunit ... 39 0.006
U81144-1|AAB39358.1| 493|Caenorhabditis elegans non-alpha nicot... 39 0.006
AC024207-2|AAL77193.1| 425|Caenorhabditis elegans Hypothetical ... 39 0.006
AC024207-1|AAL77194.1| 428|Caenorhabditis elegans Hypothetical ... 39 0.006
U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine r... 38 0.007
AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine... 38 0.007
Z99281-29|CAH04731.2| 438|Caenorhabditis elegans Hypothetical p... 38 0.010
Z74044-1|CAA98550.1| 548|Caenorhabditis elegans Hypothetical pr... 38 0.013
Z74039-11|CAA98508.1| 548|Caenorhabditis elegans Hypothetical p... 38 0.013
Y08637-1|CAA69927.1| 487|Caenorhabditis elegans nicotinic acety... 38 0.013
U23525-2|AAK71378.1| 487|Caenorhabditis elegans Acetylcholine r... 38 0.013
AF077307-1|AAC98095.1| 548|Caenorhabditis elegans acetyl cholin... 38 0.013
AC006631-5|AAF39790.3| 469|Caenorhabditis elegans Acetylcholine... 37 0.017
Z74039-9|CAA98507.1| 564|Caenorhabditis elegans Hypothetical pr... 37 0.022
Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical pr... 37 0.022
Z66500-2|CAA91304.2| 500|Caenorhabditis elegans Hypothetical pr... 37 0.022
U19747-1|AAA92689.1| 564|Caenorhabditis elegans nicotinic acety... 37 0.022
U19746-1|AAA92688.1| 564|Caenorhabditis elegans nicotinic acety... 37 0.022
Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical pr... 36 0.030
U53337-6|AAA96188.2| 510|Caenorhabditis elegans Acetylcholine r... 35 0.069
AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical ... 35 0.069
U00053-1|AAZ94293.1| 548|Caenorhabditis elegans Acetylcholine r... 35 0.091
Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical pr... 34 0.12
AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine... 34 0.12
AC006679-2|AAK84465.2| 425|Caenorhabditis elegans Ligand-gated ... 34 0.12
Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical pr... 34 0.16
AY519853-1|AAR89634.1| 545|Caenorhabditis elegans acetylcholine... 34 0.16
AF067943-10|AAC17666.3| 545|Caenorhabditis elegans Acetylcholin... 34 0.16
AF047656-8|AAC05109.2| 340|Caenorhabditis elegans Ligand-gated ... 34 0.16
AC006618-5|ABB88234.1| 513|Caenorhabditis elegans Gaba/glycine ... 34 0.16
AC006618-4|ABB88233.1| 546|Caenorhabditis elegans Gaba/glycine ... 34 0.16
Z36753-16|CAA85338.2| 538|Caenorhabditis elegans Hypothetical p... 33 0.21
AF187012-1|AAG35182.1| 538|Caenorhabditis elegans nicotinic ace... 33 0.21
U10401-10|AAA19062.2| 476|Caenorhabditis elegans Hypothetical p... 33 0.28
Z67737-2|CAA91537.3| 400|Caenorhabditis elegans Hypothetical pr... 33 0.37
Z92830-9|CAB07361.2| 461|Caenorhabditis elegans Hypothetical pr... 32 0.64
U14524-1|AAA50785.1| 461|Caenorhabditis elegans avermectin-sens... 32 0.64
AF038606-6|AAB92023.2| 464|Caenorhabditis elegans Hypothetical ... 32 0.64
Z81085-2|CAB03114.2| 618|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z83120-8|CAE46678.2| 511|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z83120-7|CAB51466.2| 514|Caenorhabditis elegans Hypothetical pr... 31 1.5
AY523515-1|AAR98637.1| 553|Caenorhabditis elegans acetylcholine... 31 1.5
Z67737-6|CAA91540.3| 399|Caenorhabditis elegans Hypothetical pr... 30 2.0
AF026215-3|AAB71323.3| 563|Caenorhabditis elegans Hypothetical ... 30 2.0
U28928-2|AAA68335.2| 329|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z49907-4|CAA90086.1| 454|Caenorhabditis elegans Hypothetical pr... 29 3.4
AF498370-1|AAN65376.1| 550|Caenorhabditis elegans GABA-A recept... 28 7.9
>Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 51.6 bits (118), Expect = 7e-07
Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Frame = +2
Query: 107 MIDSLLATYDRDSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLXWNAG 283
+ + LL+ ++ ++PPD + V L L H I E + T+ + + +W+D L W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 284 EWG--CSTWLVSSERLWRPDVVLLNAAATTAGDYALR--ARVSNNGSV 415
+G TW + +++W PD+++ N A A+R AR+ NG++
Sbjct: 130 LFGGITKTW-IPLDKIWVPDIIVFNMLAHEDLLSAVRAPARIHYNGTI 176
>AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 51.6 bits (118), Expect = 7e-07
Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Frame = +2
Query: 107 MIDSLLATYDRDSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLXWNAG 283
+ + LL+ ++ ++PPD + V L L H I E + T+ + + +W+D L W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 284 EWG--CSTWLVSSERLWRPDVVLLNAAATTAGDYALR--ARVSNNGSV 415
+G TW + +++W PD+++ N A A+R AR+ NG++
Sbjct: 130 LFGGITKTW-IPLDKIWVPDIIVFNMLAHEDLLSAVRAPARIHYNGTI 176
>AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 51.6 bits (118), Expect = 7e-07
Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Frame = +2
Query: 107 MIDSLLATYDRDSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLXWNAG 283
+ + LL+ ++ ++PPD + V L L H I E + T+ + + +W+D L W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 284 EWG--CSTWLVSSERLWRPDVVLLNAAATTAGDYALR--ARVSNNGSV 415
+G TW + +++W PD+++ N A A+R AR+ NG++
Sbjct: 130 LFGGITKTW-IPLDKIWVPDIIVFNMLAHEDLLSAVRAPARIHYNGTI 176
>Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical
protein C35C5.5 protein.
Length = 531
Score = 50.8 bits (116), Expect = 1e-06
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Frame = +2
Query: 44 FLLTCAIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHL-RHANIRE 208
FLL I +S ++++LL Y++ P + V +L R ++ E
Sbjct: 11 FLLVIFILHIVTINANKHVSQLLENLLTDYNKAVRPVHNASDALKVKFGANLCRLIDVDE 70
Query: 209 SESTVRIQADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 358
+ L+M W DK+L WN +WG ++ + S+++W PD+VL N A
Sbjct: 71 VNQVLTTSLWLEMQWYDKKLTWNPTDWGGVEYIHIPSDQIWIPDIVLYNNA 121
>Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 48.0 bits (109), Expect = 9e-06
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Frame = +2
Query: 107 MIDSLLATYDRDSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLXWNAG 283
+ + LL+ ++ ++PPD + V L L H I E + T+ + + +W+D L W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 284 EWG--CSTWLVSSERLWRPDVVLLN 352
+G TW + +++W PD+++ N
Sbjct: 130 LFGGITKTW-IPLDKIWVPDIIVFN 153
>AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 48.0 bits (109), Expect = 9e-06
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Frame = +2
Query: 107 MIDSLLATYDRDSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLXWNAG 283
+ + LL+ ++ ++PPD + V L L H I E + T+ + + +W+D L W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 284 EWG--CSTWLVSSERLWRPDVVLLN 352
+G TW + +++W PD+++ N
Sbjct: 130 LFGGITKTW-IPLDKIWVPDIIVFN 153
>AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 48.0 bits (109), Expect = 9e-06
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Frame = +2
Query: 107 MIDSLLATYDRDSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLXWNAG 283
+ + LL+ ++ ++PPD + V L L H I E + T+ + + +W+D L W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 284 EWG--CSTWLVSSERLWRPDVVLLN 352
+G TW + +++W PD+++ N
Sbjct: 130 LFGGITKTW-IPLDKIWVPDIIVFN 153
>X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 46.4 bits (105), Expect = 3e-05
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Frame = +2
Query: 38 YRFLLTCAIASAAECENATSLSLMIDSLLATYDR----DSPPDSKIVVNLTLHLRHA-NI 202
+ LL I+ E + D L+ Y+R + P+ + + L L L ++
Sbjct: 7 FLLLLLFCISFIKLTEGNEDAKRLYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDV 66
Query: 203 RESESTVRIQADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA 358
E + + L+ WID++L W+ + G + V E +W PD+VL N A
Sbjct: 67 HEIDQIMTCSVWLKQTWIDRKLSWDPVNYGGVNVLYVPYEMIWVPDIVLYNNA 119
>X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 46.4 bits (105), Expect = 3e-05
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Frame = +2
Query: 38 YRFLLTCAIASAAECENATSLSLMIDSLLATYDR----DSPPDSKIVVNLTLHLRHA-NI 202
+ LL I+ E + D L+ Y+R + P+ + + L L L ++
Sbjct: 7 FLLLLLFCISFIKLTEGNEDAKRLYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDV 66
Query: 203 RESESTVRIQADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA 358
E + + L+ WID++L W+ + G + V E +W PD+VL N A
Sbjct: 67 HEIDQIMTCSVWLKQTWIDRKLSWDPVNYGGVNVLYVPYEMIWVPDIVLYNNA 119
>X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 498
Score = 46.4 bits (105), Expect = 3e-05
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Frame = +2
Query: 47 LLTCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRHA-----NIRES 211
L++CAI +A + L D L+ Y+ P + +T+HL+ A ++ E
Sbjct: 7 LISCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEK 65
Query: 212 ESTVRIQADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLNAAAT 364
V + A L W D L W+ E+G T + + ++W+PDV+L N+ T
Sbjct: 66 NQVVYVNAWLDYTWNDYNLVWDKAEYGNITDVRFPAGKIWKPDVLLYNSVDT 117
>U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated
protein 38 protein.
Length = 511
Score = 46.4 bits (105), Expect = 3e-05
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Frame = +2
Query: 38 YRFLLTCAIASAAECENATSLSLMIDSLLATYDR----DSPPDSKIVVNLTLHLRHA-NI 202
+ LL I+ E + D L+ Y+R + P+ + + L L L ++
Sbjct: 7 FLLLLLFCISFIKLTEGNEDAKRLYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDV 66
Query: 203 RESESTVRIQADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA 358
E + + L+ WID++L W+ + G + V E +W PD+VL N A
Sbjct: 67 HEIDQIMTCSVWLKQTWIDRKLSWDPVNYGGVNVLYVPYEMIWVPDIVLYNNA 119
>AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine
receptor (57.1 kD)alternative variant 1 protein.
Length = 498
Score = 46.4 bits (105), Expect = 3e-05
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Frame = +2
Query: 47 LLTCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRHA-----NIRES 211
L++CAI +A + L D L+ Y+ P + +T+HL+ A ++ E
Sbjct: 7 LISCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEK 65
Query: 212 ESTVRIQADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLNAAAT 364
V + A L W D L W+ E+G T + + ++W+PDV+L N+ T
Sbjct: 66 NQVVYVNAWLDYTWNDYNLVWDKAEYGNITDVRFPAGKIWKPDVLLYNSVDT 117
>AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform b protein.
Length = 480
Score = 46.4 bits (105), Expect = 3e-05
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Frame = +2
Query: 47 LLTCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRHA-----NIRES 211
L++CAI +A + L D L+ Y+ P + +T+HL+ A ++ E
Sbjct: 7 LISCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEK 65
Query: 212 ESTVRIQADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLNAAAT 364
V + A L W D L W+ E+G T + + ++W+PDV+L N+ T
Sbjct: 66 NQVVYVNAWLDYTWNDYNLVWDKAEYGNITDVRFPAGKIWKPDVLLYNSVDT 117
>AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform a protein.
Length = 498
Score = 46.4 bits (105), Expect = 3e-05
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Frame = +2
Query: 47 LLTCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRHA-----NIRES 211
L++CAI +A + L D L+ Y+ P + +T+HL+ A ++ E
Sbjct: 7 LISCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEK 65
Query: 212 ESTVRIQADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLNAAAT 364
V + A L W D L W+ E+G T + + ++W+PDV+L N+ T
Sbjct: 66 NQVVYVNAWLDYTWNDYNLVWDKAEYGNITDVRFPAGKIWKPDVLLYNSVDT 117
>AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit protein.
Length = 502
Score = 46.0 bits (104), Expect = 4e-05
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Frame = +2
Query: 107 MIDSLLATYDRDSPPDSK----IVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLX 271
+ + L+A Y++ P S+ +VV L L ++ E + LQ +W+D +L
Sbjct: 30 LFEDLIADYNKLVRPVSENGETLVVTFKLKLSQLLDVHEKNQIMTTNVWLQHSWMDYKLR 89
Query: 272 WNAGEW-GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSV 415
W+ E+ G V S+ +W PDVVL N A G+Y + +A+++ NG+V
Sbjct: 90 WDPVEYGGVEVLYVPSDTIWLPDVVLYNNA---DGNYQVTIMTKAKLTYNGTV 139
>AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinated
protein 63 protein.
Length = 502
Score = 46.0 bits (104), Expect = 4e-05
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Frame = +2
Query: 107 MIDSLLATYDRDSPPDSK----IVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLX 271
+ + L+A Y++ P S+ +VV L L ++ E + LQ +W+D +L
Sbjct: 30 LFEDLIADYNKLVRPVSENGETLVVTFKLKLSQLLDVHEKNQIMTTNVWLQHSWMDYKLR 89
Query: 272 WNAGEW-GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSV 415
W+ E+ G V S+ +W PDVVL N A G+Y + +A+++ NG+V
Sbjct: 90 WDPVEYGGVEVLYVPSDTIWLPDVVLYNNA---DGNYQVTIMTKAKLTYNGTV 139
>X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 575
Score = 45.6 bits (103), Expect = 5e-05
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 197 NIRESESTVRIQADLQMNWIDKRLXWNAGEWG-CSTWLVSSERLWRPDVVLLNAA 358
N+ E ++ L M W D +L WN E+G S V S+R+W PD+VL N A
Sbjct: 99 NVDEKNQILQTNVWLTMKWNDFQLAWNPAEYGNISNLHVPSDRVWLPDIVLFNNA 153
>U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine
receptor protein 2 protein.
Length = 575
Score = 45.6 bits (103), Expect = 5e-05
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 197 NIRESESTVRIQADLQMNWIDKRLXWNAGEWG-CSTWLVSSERLWRPDVVLLNAA 358
N+ E ++ L M W D +L WN E+G S V S+R+W PD+VL N A
Sbjct: 99 NVDEKNQILQTNVWLTMKWNDFQLAWNPAEYGNISNLHVPSDRVWLPDIVLFNNA 153
>AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine
receptor protein 6 protein.
Length = 562
Score = 44.8 bits (101), Expect = 8e-05
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 197 NIRESESTVRIQADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 358
++ E + + ++ L +W+D RL WN E+G T + E LW PD++L N A
Sbjct: 44 DVHEKDQVITLKGTLIHHWLDYRLSWNPDEFGNITLMHFPGEMLWLPDIILYNNA 98
>U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine
receptor protein 11 protein.
Length = 461
Score = 43.6 bits (98), Expect = 2e-04
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Frame = +2
Query: 23 LYYSCYRFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLR 190
+ ++ +L+ I + C+ + + + + LL Y+ P + V + L L+
Sbjct: 1 MIFNLINSILSLVIIHSNLCDGSVAETKLFTDLLKGYNPLERPVQNSSQPLEVKIKLFLQ 60
Query: 191 HA-NIRESESTVRIQADLQMNWIDKRLXWNAGEWGCSTWLV---SSERLWRPDVVLLNAA 358
++ E V + A L W D +L W ++G + SS+ +W+PDV+L N+A
Sbjct: 61 QILDVDEKNQIVSVNAWLSYTWFDHKLQWEPKKYGGIQDIRFPGSSDHIWKPDVLLYNSA 120
Query: 359 A 361
A
Sbjct: 121 A 121
>AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical
protein F15E6.2 protein.
Length = 445
Score = 43.6 bits (98), Expect = 2e-04
Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 2/129 (1%)
Frame = +2
Query: 68 SAAECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQM 247
S C+ + + TY + +K+V ++ + + I E V++ +
Sbjct: 54 SCHSCQGGDRAWKLRTHIQTTYQNATDNKTKVVRVESVRINNVEIDERRQNVKVFGRFVL 113
Query: 248 NWIDKRLXWNAGEWGCSTWLVSSERLWRPDVVLLNAAATT-AGDYALRARVSN-NGSVSX 421
+W D + W+ +WG S ++W P++V +N +T+ G + +N G +
Sbjct: 114 SWNDTMVSWDKEQWGLSWLNFYWIQIWTPNIVQINGGSTSNPGQVTSKVLAANYTGQIYL 173
Query: 422 IKRLDISTP 448
+TP
Sbjct: 174 WSDFSFTTP 182
>U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical
protein F18G5.4 protein.
Length = 615
Score = 43.2 bits (97), Expect = 3e-04
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 206 ESESTVRIQADLQMNWIDKRLXWNAGEWG-CSTWLVSSERLWRPDVVLLNAA 358
E + ++ L +NW+D RL WN W + R+W+PD++L+N A
Sbjct: 154 ERNQALTTRSWLNINWMDPRLSWNESLWSEIKAIYIPHARIWKPDIILVNNA 205
>Z92837-3|CAB07402.3| 502|Caenorhabditis elegans Hypothetical
protein R03E1.3 protein.
Length = 502
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +2
Query: 167 VNLTLHLRHAN-IRESESTVRIQADLQMNWIDKRLXWNAGEWGCSTWLVSSERLWRPDVV 343
VN+ L + H + E E T + + WID+ + W+A + + +S+ LW+P +
Sbjct: 54 VNVFLSIAHVEKVDEHEQTALVHGHIWATWIDEYMQWDAKKENVTKLTISAHSLWQPALA 113
Query: 344 LLNAA 358
L N+A
Sbjct: 114 LYNSA 118
>Z50029-2|CAA90341.3| 537|Caenorhabditis elegans Hypothetical
protein ZC504.2 protein.
Length = 537
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 185 LRHANIRESESTVRIQADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 358
+R ++ E + L+M W D RL W+ G WG L V +++W PD++L N A
Sbjct: 59 IRIIDVDEVNQVLTTNLWLEMQWFDYRLMWDPGRWGKIRKLHVPVDQIWIPDILLYNNA 117
>AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical
protein Y105C5B.16 protein.
Length = 400
Score = 42.3 bits (95), Expect = 5e-04
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +2
Query: 131 YDRDSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLXWNAGEWGCSTWL- 307
YD ++P + L +L+ ++E + + + ++ W D RL WNA W +T +
Sbjct: 64 YDNEAPKRYNYTIFL-YYLKLVEVQEPQEKISVVMEIMEYWYDARLSWNASAWQNTTMIY 122
Query: 308 VSSERLWRPDV 340
+ +++W P +
Sbjct: 123 MKQDKVWSPTI 133
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 42.3 bits (95), Expect = 5e-04
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Frame = +2
Query: 107 MIDSLLATYDRDSPP--DSK--IVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLX 271
+I+ L++ Y R+ P DS +VV+L + L+ N+ E E + + A L+ W D+ L
Sbjct: 25 LINDLMSGYVREERPTLDSSKPVVVSLGVFLQQIINLSEKEEQLEVNAWLKFQWRDENLR 84
Query: 272 WNAGEWGCSTWL-VSSERLWRPDVVLLNA 355
W + T L + LW PD++L N+
Sbjct: 85 WEPTAYENVTDLRHPPDALWTPDILLYNS 113
>AC006808-1|AAF60813.1| 486|Caenorhabditis elegans Hypothetical
protein Y58G8A.1 protein.
Length = 486
Score = 42.3 bits (95), Expect = 5e-04
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Frame = +2
Query: 167 VNLTLHLRHAN-IRESESTVRIQADLQMNWIDKRLXWNAGEWGCSTWLVSSERLWRPDVV 343
V + L++ H + E E T + L +W D+ L W ST ++S +LW+P +
Sbjct: 54 VAVYLNIAHVEKVDEHEQTALVHGHLMASWTDEYLKWERKATNISTLSIASSKLWQPALQ 113
Query: 344 LLNAAATTAGDY---ALRARVSNNGSV 415
L N+A + L A V N G V
Sbjct: 114 LYNSARGNSWSLYLTGLPAIVYNTGKV 140
>Z99281-1|CAB16504.2| 439|Caenorhabditis elegans Hypothetical
protein Y57G11C.2 protein.
Length = 439
Score = 41.9 bits (94), Expect = 6e-04
Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Frame = +2
Query: 44 FLLTCAIASAAECENATSLSLMIDSLLATYDRDSPPDSK----IVVNLTLHLRHA-NIRE 208
F L + + E + T + D L+ YD P + +++N++++ +
Sbjct: 10 FYLAISWCNLLEVDGITVAEQLKDVLMEGYDSSIRPVNNERDILIINISMNTMSVLTLDP 69
Query: 209 SESTVRIQADLQMNWIDKRLXWNAGEWGCSTWLVSSER-LWRPDVVLLNAAAT 364
+E T+ ++ + W D+ L WN ++ TWL E LW PD + + T
Sbjct: 70 AEETINFSSEFILQWKDEFLFWNKSDYNI-TWLKLKESFLWTPDTTVSTSIDT 121
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 456 MQLDNWPNXMQTCTFKFGPRMHNSDEXDFVIDK 554
M +D +P QTC K GP + + E ++ +
Sbjct: 154 MNVDKFPYDQQTCMIKMGPWSYTTQEVTCIVGR 186
>L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte uptake
defective protein4 protein.
Length = 433
Score = 41.9 bits (94), Expect = 6e-04
Identities = 20/81 (24%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Frame = +2
Query: 164 VVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDV 340
+V++ H+ H +I + E T+ + + M W D+ L W+ ++ + V ++W+P +
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWDPKDFNNIQYARVKKWQVWQPKI 133
Query: 341 VLLNAAA--TTAGDYALRARV 397
+ N+A+ +A D++ A V
Sbjct: 134 KVSNSASGLGSAFDFSTSAHV 154
>AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein.
Length = 433
Score = 41.9 bits (94), Expect = 6e-04
Identities = 20/81 (24%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Frame = +2
Query: 164 VVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDV 340
+V++ H+ H +I + E T+ + + M W D+ L W+ ++ + V ++W+P +
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWDPKDFNNIQYARVKKWQVWQPKI 133
Query: 341 VLLNAAA--TTAGDYALRARV 397
+ N+A+ +A D++ A V
Sbjct: 134 KVSNSASGLGSAFDFSTSAHV 154
>Z81071-1|CAB03014.2| 510|Caenorhabditis elegans Hypothetical
protein F28F8.1 protein.
Length = 510
Score = 41.5 bits (93), Expect = 8e-04
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Frame = +2
Query: 200 IRESESTVRIQADLQMNWIDKRLXWNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTA-- 370
+ E + V I L++ WID+ L W+ ++G S V + ++W+PDV++ N A
Sbjct: 69 VDERDQIVNIYCWLELYWIDETLTWDPKKFGNLSRIHVPAHKIWKPDVLVYNNANMNVEE 128
Query: 371 GDYALRARVSNNGSVSXIKRL--DIS 442
+ A V N G V + + DIS
Sbjct: 129 NEMETNAIVDNTGRVMLFRSMITDIS 154
>AY523513-1|AAR98635.1| 510|Caenorhabditis elegans acetylcholine
receptor, one ofnine alpha a7-like nicotinic
acetylcholine receptor subunits(58.6 kD) (acr-18)
protein.
Length = 510
Score = 41.5 bits (93), Expect = 8e-04
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Frame = +2
Query: 200 IRESESTVRIQADLQMNWIDKRLXWNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTA-- 370
+ E + V I L++ WID+ L W+ ++G S V + ++W+PDV++ N A
Sbjct: 69 VDERDQIVNIYCWLELYWIDETLTWDPKKFGNLSRIHVPAHKIWKPDVLVYNNANMNVEE 128
Query: 371 GDYALRARVSNNGSVSXIKRL--DIS 442
+ A V N G V + + DIS
Sbjct: 129 NEMETNAIVDNTGRVMLFRSMITDIS 154
>AL110490-4|CAB54450.1| 474|Caenorhabditis elegans Hypothetical
protein Y48B6A.4 protein.
Length = 474
Score = 41.5 bits (93), Expect = 8e-04
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Frame = +2
Query: 107 MIDSLLATYDRDSPP--DSKIVVNLTLHL---RHANIRESESTVRIQADLQMNWIDKRLX 271
++ L YD P D + VN+ L L + ++ E + + Q W D +L
Sbjct: 28 LLKDLREGYDPVERPVADHRKPVNVKLRLILQQLVDVDERNQVITLVVWNQYTWNDYKLR 87
Query: 272 WNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSV 415
W+ E+G T L + LW+PD++L N+A + + VS+NG V
Sbjct: 88 WSPEEYGNITTLQIPHGTLWKPDILLFNSANEHFDASFPVHMVVSSNGDV 137
>AC084197-42|AAU87806.2| 544|Caenorhabditis elegans Acetylcholine
receptor protein 25 protein.
Length = 544
Score = 41.1 bits (92), Expect = 0.001
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Frame = +2
Query: 161 IVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRP 334
++V + L L+ ++ E V + A L+ +W+D L W ++G T L +LW P
Sbjct: 51 VMVKMGLVLQQIVDVDEKNQVVDVNAWLKFSWVDYSLKWKPEDYGGVTDLRFRKGQLWTP 110
Query: 335 DVVLLNAAATTAGD-YALRARVSNNGSVS 418
DV++ N+A YA V NG V+
Sbjct: 111 DVLMYNSADPQFDSRYASNLLVYPNGLVN 139
>Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical
protein F09E8.7 protein.
Length = 507
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 197 NIRESESTVRIQADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 358
N+ E E + L M W D +L W+ ++ T + V+ E++W PD+VL N A
Sbjct: 77 NVDEKEQVMHTNVWLTMKWDDFQLKWDPRDYANITQIRVAPEKVWLPDIVLFNNA 131
>X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit protein.
Length = 507
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 197 NIRESESTVRIQADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 358
N+ E E + L M W D +L W+ ++ T + V+ E++W PD+VL N A
Sbjct: 77 NVDEKEQVMHTNVWLTMKWDDFQLKWDPRDYANITQIRVAPEKVWLPDIVLFNNA 131
>X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 507
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 197 NIRESESTVRIQADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 358
N+ E E + L M W D +L W+ ++ T + V+ E++W PD+VL N A
Sbjct: 77 NVDEKEQVMHTNVWLTMKWDDFQLKWDPRDYANITQIRVAPEKVWLPDIVLFNNA 131
>AF047656-7|AAC05108.2| 462|Caenorhabditis elegans Ligand-gated ion
channel protein 6 protein.
Length = 462
Score = 40.7 bits (91), Expect = 0.001
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Frame = +2
Query: 62 IASAAECENATSLSLMIDSLLATYDRD-SPPDSKIVVNLTLH-LRHANIRESESTVRIQA 235
+ + A E + + +L+ TYD D P D +V +T + ++ +++ T++
Sbjct: 17 LTAVAFLETSNTETLLQQLFNQTYDVDMKPSDDLTMVTITPNTFILLSMDQTQETIQYSE 76
Query: 236 DLQMNWIDKRLXWNAGEWGC-STWL-VSSERLWRPDVVLLN 352
+ + W D L WN + W+ +S+ R W PDV+ N
Sbjct: 77 EFLLRWYDPILHWNQSAVSYENDWIKISASRAWIPDVIFTN 117
>Z68118-7|CAA92184.2| 573|Caenorhabditis elegans Hypothetical
protein R01E6.4 protein.
Length = 573
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 185 LRHANIRESESTVRIQADLQMNWIDKRLXWNAGEWG-CSTWLVSSERLWRPDVVLLNAAA 361
+R ++ E + L+M W D +L W ++G T + S+ +W PD+VL N AA
Sbjct: 72 IRIIDVDEKNQVLTTNLWLEMKWNDAKLTWTPEKYGGLKTLHIPSDFIWTPDLVLYNNAA 131
>Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.1 protein.
Length = 399
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +2
Query: 131 YDRDSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLXWNAGEWGCSTWLV 310
YD D+P + L +L+ + E E V + +L W D RL WNA ++ T +
Sbjct: 65 YDPDAPQRYNYTLFL-YNLKLIQVNEPEEQVSVVLELMEYWYDPRLSWNASDYKNVTAIF 123
Query: 311 S-SERLWRP 334
+ E++W P
Sbjct: 124 TRQEKIWSP 132
>U88177-6|AAB42293.1| 446|Caenorhabditis elegans Acetylcholine
receptor protein17, isoform a protein.
Length = 446
Score = 39.5 bits (88), Expect = 0.003
Identities = 26/118 (22%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Frame = +2
Query: 107 MIDSLLATYDRDSPP---DSKIVVNLTLHLRHANIR---ESESTVRIQADLQMNWIDKRL 268
+I L Y ++ P +S N+T+ L I+ E++ + + ++ W D+ L
Sbjct: 27 LIKYLFRDYHKELRPVKDESSGPTNVTVQLYFKQIQKVHENDQIITLYCWIEEYWQDEFL 86
Query: 269 XWNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTAGDYALR--ARVSNNGSVSXIKRL 433
WN ++G + V SE +W+PD+++ N A + ++ ++ + G +S + +
Sbjct: 87 TWNPSDFGNIKSLHVPSEMIWKPDLLVYNNANMNIKENEMQTNVQIEHTGKISLFRAI 144
>U88177-5|AAT48618.1| 515|Caenorhabditis elegans Acetylcholine
receptor protein17, isoform b protein.
Length = 515
Score = 39.5 bits (88), Expect = 0.003
Identities = 26/118 (22%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Frame = +2
Query: 107 MIDSLLATYDRDSPP---DSKIVVNLTLHLRHANIR---ESESTVRIQADLQMNWIDKRL 268
+I L Y ++ P +S N+T+ L I+ E++ + + ++ W D+ L
Sbjct: 27 LIKYLFRDYHKELRPVKDESSGPTNVTVQLYFKQIQKVHENDQIITLYCWIEEYWQDEFL 86
Query: 269 XWNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTAGDYALR--ARVSNNGSVSXIKRL 433
WN ++G + V SE +W+PD+++ N A + ++ ++ + G +S + +
Sbjct: 87 TWNPSDFGNIKSLHVPSEMIWKPDLLVYNNANMNIKENEMQTNVQIEHTGKISLFRAI 144
>U28929-5|AAA68348.2| 438|Caenorhabditis elegans Gaba/glycine
receptor family (seegbr) protein 3 protein.
Length = 438
Score = 39.5 bits (88), Expect = 0.003
Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 8/161 (4%)
Frame = +2
Query: 53 TCAIASAAECE-NATSLSLMIDSLLATYDRDS-PPDSKIVVNLTLHLRH-ANIRESESTV 223
T ++ A CE N+ ++ LL YD+ P ++ + V++ L ++ ++I E S+
Sbjct: 20 TESLVDPAHCEYNSNHRKSILTDLLQDYDKTMVPSNNSVQVSVELTVQDISSISEISSSF 79
Query: 224 RIQADLQMNWIDKRLXWNAGEWGCSTWLVS--SERLWRPDVVLLNAAATTAGDYA---LR 388
W D RL + + L S SERLW P+V +N+ +T +
Sbjct: 80 IADVWFSQVWYDPRLEYRNISCKTNLSLDSYVSERLWTPNVCFVNSKSTQVHKSPASNIL 139
Query: 389 ARVSNNGSVSXIKRLDISTPIFYAVRQLAQXHADLHVQVRS 511
+ NG+V R+ +S P + + + + H+ S
Sbjct: 140 LIIYPNGTVWLNYRVQVSAPCSFELSRFPIDAQECHLVFES 180
>AY523512-1|AAR98634.1| 499|Caenorhabditis elegans acetylcholine
receptor, nicotinic,alpha 9 like (58.1 kD) alternative
variant a protein.
Length = 499
Score = 39.5 bits (88), Expect = 0.003
Identities = 26/118 (22%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Frame = +2
Query: 107 MIDSLLATYDRDSPP---DSKIVVNLTLHLRHANIR---ESESTVRIQADLQMNWIDKRL 268
+I L Y ++ P +S N+T+ L I+ E++ + + ++ W D+ L
Sbjct: 11 LIKYLFRDYHKELRPVKDESSGPTNVTVQLYFKQIQKVHENDQIITLYCWIEEYWQDEFL 70
Query: 269 XWNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTAGDYALR--ARVSNNGSVSXIKRL 433
WN ++G + V SE +W+PD+++ N A + ++ ++ + G +S + +
Sbjct: 71 TWNPSDFGNIKSLHVPSEMIWKPDLLVYNNANMNIKENEMQTNVQIEHTGKISLFRAI 128
>AF187013-1|AAG35183.1| 573|Caenorhabditis elegans nicotinic
acetylcholine receptor-like subunit ACR-12 protein.
Length = 573
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 185 LRHANIRESESTVRIQADLQMNWIDKRLXWNAGEWG-CSTWLVSSERLWRPDVVLLNAAA 361
+R ++ E + L+M W D +L W ++G T + S+ +W PD+VL N AA
Sbjct: 72 IRIIDVDEKNQVLTTNLWLEMKWNDAKLTWTPEKYGGLKTLHIPSDFIWTPDLVLYNNAA 131
>AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical
protein Y45G5AL.2 protein.
Length = 404
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Frame = +2
Query: 146 PPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLXWNAGEWGCSTWL-VSSER 322
PP +I + L++ ++ + E E D + +W D RL W+ ++G + V +
Sbjct: 79 PPRFEITIQLSM-MKLVEVVEPEEKATFLFDYRADWYDTRLSWDPEDYGGINHIYVPRSK 137
Query: 323 LWRPDVVLLNAAATTAGD--YALRARVSNNGSV 415
+W P+ +++ + D Y A + +NGS+
Sbjct: 138 VWIPETTIVDCSEIKVFDNEYTRYAWLHSNGSI 170
>AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated
ion channel protein 1 protein.
Length = 371
Score = 39.1 bits (87), Expect = 0.004
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +2
Query: 146 PPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLXWNAGEW-GCSTWLVSSER 322
PP +++ + + + L+ ++ E E V D W D+RL WN E+ G S V
Sbjct: 51 PPITELKLTMAM-LKLVDVVEVEEKVTFLFDYLAEWTDQRLKWNPLEYGGISHIYVPQRM 109
Query: 323 LWRPDVVLLNA 355
+W P+V + +A
Sbjct: 110 IWLPEVTIADA 120
>Z80220-5|CAB02308.1| 493|Caenorhabditis elegans Hypothetical
protein T08G11.5 protein.
Length = 493
Score = 38.7 bits (86), Expect = 0.006
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +2
Query: 161 IVVNLTLHL-RHANIRESESTVRIQADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRP 334
++V + L L N+ E + + L + W D ++ WN +G + VS +++W P
Sbjct: 56 LIVKMALQLVLLINVDEKDQVMHTNVWLTLQWHDFQMKWNPVNYGEIKQIRVSPDKVWLP 115
Query: 335 DVVLLNAA 358
D+VL N A
Sbjct: 116 DIVLFNNA 123
>Z70266-4|CAA94206.3| 534|Caenorhabditis elegans Hypothetical
protein C40C9.2 protein.
Length = 534
Score = 38.7 bits (86), Expect = 0.006
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Frame = +2
Query: 161 IVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLXWNAGEWGCSTWL---VSSERLW 328
+VV++ ++L+ ++ E + + A ++ W D +L W+ E+G + ++ +W
Sbjct: 53 LVVSVKIYLQQILDVDEKNQVITLVAWIEYQWTDYKLKWDPSEYGGIKDIRIPGNANAIW 112
Query: 329 RPDVVLLNAA-ATTAGDYALRARVSNNGSV 415
+PDV+L N+A Y + VS G V
Sbjct: 113 KPDVLLYNSADENFDSTYPVNYVVSYTGDV 142
>X83888-1|CAA58765.1| 493|Caenorhabditis elegans beta-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 493
Score = 38.7 bits (86), Expect = 0.006
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +2
Query: 161 IVVNLTLHL-RHANIRESESTVRIQADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRP 334
++V + L L N+ E + + L + W D ++ WN +G + VS +++W P
Sbjct: 56 LIVKMALQLVLLINVDEKDQVMHTNVWLTLQWHDFQMKWNPVNYGEIKQIRVSPDKVWLP 115
Query: 335 DVVLLNAA 358
D+VL N A
Sbjct: 116 DIVLFNNA 123
>U81144-1|AAB39358.1| 493|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit precursor
protein.
Length = 493
Score = 38.7 bits (86), Expect = 0.006
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +2
Query: 161 IVVNLTLHL-RHANIRESESTVRIQADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRP 334
++V + L L N+ E + + L + W D ++ WN +G + VS +++W P
Sbjct: 56 LIVKMALQLVLLINVDEKDQVMHTNVWLTLQWHDFQMKWNPVNYGEIKQIRVSPDKVWLP 115
Query: 335 DVVLLNAA 358
D+VL N A
Sbjct: 116 DIVLFNNA 123
>AC024207-2|AAL77193.1| 425|Caenorhabditis elegans Hypothetical
protein Y74E4A.1a protein.
Length = 425
Score = 38.7 bits (86), Expect = 0.006
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 221 VRIQADLQMNWIDKRLXWNAGEWGCSTW-LVSSERLWRPDV 340
+ I L+++W D+RL WN EW L S RLW PD+
Sbjct: 101 MNINGFLKLSWKDRRLRWNPEEWKTEVLRLKSMGRLWSPDI 141
>AC024207-1|AAL77194.1| 428|Caenorhabditis elegans Hypothetical
protein Y74E4A.1b protein.
Length = 428
Score = 38.7 bits (86), Expect = 0.006
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 221 VRIQADLQMNWIDKRLXWNAGEWGCSTW-LVSSERLWRPDV 340
+ I L+++W D+RL WN EW L S RLW PD+
Sbjct: 101 MNINGFLKLSWKDRRLRWNPEEWKTEVLRLKSMGRLWSPDI 141
>U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine
receptor protein 22 protein.
Length = 434
Score = 38.3 bits (85), Expect = 0.007
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Frame = +2
Query: 164 VVNLTLHLRHAN---IRESESTVRIQADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWR 331
V+N+T+ + N + E ++I +W D L W+ EW G ++ ++W
Sbjct: 60 VLNVTVQPQIYNLVEVNEQNEQIKILLWFPQSWKDDYLTWDPKEWNGIERIIIPKSQIWI 119
Query: 332 PDVVLLNAAATT--AGDYALRARVSNNGSVSXIKRLDISTPI 451
PD + N T ++ R R V K +D++ P+
Sbjct: 120 PDGYIFNTVEETEPLENHNARVRYDGRVEVDFNKLVDLTCPM 161
>AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine
receptor (51.1 kD)(acr-22) protein.
Length = 434
Score = 38.3 bits (85), Expect = 0.007
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Frame = +2
Query: 164 VVNLTLHLRHAN---IRESESTVRIQADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWR 331
V+N+T+ + N + E ++I +W D L W+ EW G ++ ++W
Sbjct: 60 VLNVTVQPQIYNLVEVNEQNEQIKILLWFPQSWKDDYLTWDPKEWNGIERIIIPKSQIWI 119
Query: 332 PDVVLLNAAATT--AGDYALRARVSNNGSVSXIKRLDISTPI 451
PD + N T ++ R R V K +D++ P+
Sbjct: 120 PDGYIFNTVEETEPLENHNARVRYDGRVEVDFNKLVDLTCPM 161
>Z99281-29|CAH04731.2| 438|Caenorhabditis elegans Hypothetical
protein Y57G11C.49 protein.
Length = 438
Score = 37.9 bits (84), Expect = 0.010
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Frame = +2
Query: 77 ECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLH-LRHANIRESESTVRIQADL 241
E + T + D L+ YD P + +N++++ + + +E T+ +
Sbjct: 21 EIDGITVSEQLKDVLMEGYDSSIRPVINERDTLFINISINSMSFLTLDPAEETINFSGEF 80
Query: 242 QMNWIDKRLXWNAGEWGCSTWLVSSER-LWRPDVVLLNAAAT 364
+ W D+ L WN ++ TWL E LW PD + + T
Sbjct: 81 ILQWKDEFLFWNKSDYNI-TWLKLKESFLWTPDTTVSTSIDT 121
>Z74044-1|CAA98550.1| 548|Caenorhabditis elegans Hypothetical
protein T26H10.1 protein.
Length = 548
Score = 37.5 bits (83), Expect = 0.013
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Frame = +2
Query: 47 LLTCAIASAAECENATSLSLMIDSLLATYDRDSPP--DSKIVVNLTLHL---RHANIRES 211
L T A A+ T + L+ D LL YD+ + P D+ +N++ + + + E
Sbjct: 10 LATTASLCIADTPVPTQIRLVHD-LLDNYDKKAKPMWDNSKPINVSFSMDLYQILELNEP 68
Query: 212 ESTVRIQADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLNA 355
+ + + A + W D+ L WN ++ T L + + +W PD L N+
Sbjct: 69 QQYILLNAWIIERWFDEFLYWNPDDYENITELRLPYDSIWLPDTTLYNS 117
>Z74039-11|CAA98508.1| 548|Caenorhabditis elegans Hypothetical
protein T26H10.1 protein.
Length = 548
Score = 37.5 bits (83), Expect = 0.013
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Frame = +2
Query: 47 LLTCAIASAAECENATSLSLMIDSLLATYDRDSPP--DSKIVVNLTLHL---RHANIRES 211
L T A A+ T + L+ D LL YD+ + P D+ +N++ + + + E
Sbjct: 10 LATTASLCIADTPVPTQIRLVHD-LLDNYDKKAKPMWDNSKPINVSFSMDLYQILELNEP 68
Query: 212 ESTVRIQADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLNA 355
+ + + A + W D+ L WN ++ T L + + +W PD L N+
Sbjct: 69 QQYILLNAWIIERWFDEFLYWNPDDYENITELRLPYDSIWLPDTTLYNS 117
>Y08637-1|CAA69927.1| 487|Caenorhabditis elegans nicotinic
acetylcholine receptorsubunit ACR-3 protein.
Length = 487
Score = 37.5 bits (83), Expect = 0.013
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +2
Query: 113 DSLLATYDRDSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLXWNAGEW- 289
+SL+ S P ++ +L L N+ E ++ M W D ++ W+ E+
Sbjct: 38 NSLIRPVLNASSPPIEVFFSLAFVLL-INVDEKNQIMQTNVWPTMKWNDYQMQWDPREFD 96
Query: 290 GCSTWLVSSERLWRPDVVLLNAA 358
G T V +++W PD+VL N A
Sbjct: 97 GIKTIRVPPDKVWLPDIVLFNNA 119
>U23525-2|AAK71378.1| 487|Caenorhabditis elegans Acetylcholine
receptor protein 3 protein.
Length = 487
Score = 37.5 bits (83), Expect = 0.013
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +2
Query: 113 DSLLATYDRDSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLXWNAGEW- 289
+SL+ S P ++ +L L N+ E ++ M W D ++ W+ E+
Sbjct: 38 NSLIRPVLNASSPPIEVFFSLAFVLL-INVDEKNQIMQTNVWPTMKWNDYQMQWDPREFD 96
Query: 290 GCSTWLVSSERLWRPDVVLLNAA 358
G T V +++W PD+VL N A
Sbjct: 97 GIKTIRVPPDKVWLPDIVLFNNA 119
>AF077307-1|AAC98095.1| 548|Caenorhabditis elegans acetyl choline
receptor alpha subunitDES-2 protein.
Length = 548
Score = 37.5 bits (83), Expect = 0.013
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Frame = +2
Query: 47 LLTCAIASAAECENATSLSLMIDSLLATYDRDSPP--DSKIVVNLTLHL---RHANIRES 211
L T A A+ T + L+ D LL YD+ + P D+ +N++ + + + E
Sbjct: 10 LATTASLCIADTPVPTQIRLVHD-LLDNYDKKAKPMWDNSKPINVSFSMDLYQILELNEP 68
Query: 212 ESTVRIQADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLNA 355
+ + + A + W D+ L WN ++ T L + + +W PD L N+
Sbjct: 69 QQYILLNAWIIERWFDEFLYWNPDDYENITELRLPYDSIWLPDTTLYNS 117
>AC006631-5|AAF39790.3| 469|Caenorhabditis elegans Acetylcholine
receptor protein 21 protein.
Length = 469
Score = 37.1 bits (82), Expect = 0.017
Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Frame = +2
Query: 119 LLATYDRDSPPD--SKIVVNLTLHL---RHANIRESESTVRIQADLQMNWIDKRLXWNAG 283
LL Y+ + P SK +N+T + ++ E + + ++++W+D +L W+
Sbjct: 7 LLYDYNNEVRPSVHSKEPINVTFVFSLTQIIDVDERNQILTTNSWIRLHWVDYKLVWDPR 66
Query: 284 EWGCSTWL-VSSERLWRPDVVLLNAA 358
+ T + + S+++W+PD++L N A
Sbjct: 67 LYQNVTRIHIPSDKIWKPDIILYNNA 92
>Z74039-9|CAA98507.1| 564|Caenorhabditis elegans Hypothetical
protein K03B8.9 protein.
Length = 564
Score = 36.7 bits (81), Expect = 0.022
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +2
Query: 140 DSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLXWNAGEWG-CSTWLVSS 316
D K+ ++++L+ + + E +++ + W D+ L WN E+G ++ ++
Sbjct: 73 DHKKSLKVHISISLY-QIIEVDEPSQNIKLNVWMIQKWRDEYLDWNPNEYGMINSTIIPF 131
Query: 317 ERLWRPDVVLLNA 355
LW PD L N+
Sbjct: 132 HHLWIPDTYLYNS 144
>Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.6 protein.
Length = 401
Score = 36.7 bits (81), Expect = 0.022
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 173 LTLHLRHANIRESESTVRIQADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRP 334
L +L+ ++E E V + +L W D RL WN+ + T V E++W P
Sbjct: 79 LLYYLKLVEVQEPEEKVSVVLELVEQWYDPRLSWNSSLYSNIPTVFVRQEKVWSP 133
>Z66500-2|CAA91304.2| 500|Caenorhabditis elegans Hypothetical
protein T05C12.2 protein.
Length = 500
Score = 36.7 bits (81), Expect = 0.022
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Frame = +2
Query: 197 NIRESESTVRIQADLQMNWIDKRLXWNAGEWG------CSTWLVSSERLWRPDVVLLNAA 358
++ E + I A + +W D +L W+ +G S +S +LWRPDV+L N+
Sbjct: 59 DVDEKNQVMSILAYMDYHWNDYKLTWDPKLFGGIRDVRFSGDDDASFKLWRPDVLLFNSV 118
Query: 359 ATT-AGDYALRARVSNNGSV 415
+ + Y+ R VS+NG V
Sbjct: 119 SESFDSTYSSRFIVSSNGDV 138
>U19747-1|AAA92689.1| 564|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit precursor protein.
Length = 564
Score = 36.7 bits (81), Expect = 0.022
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +2
Query: 140 DSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLXWNAGEWG-CSTWLVSS 316
D K+ ++++L+ + + E +++ + W D+ L WN E+G ++ ++
Sbjct: 73 DHKKSLKVHISISLY-QIIEVDEPSQNIKLNVWMIQKWRDEYLDWNPNEYGMINSTIIPF 131
Query: 317 ERLWRPDVVLLNA 355
LW PD L N+
Sbjct: 132 HHLWIPDTYLYNS 144
>U19746-1|AAA92688.1| 564|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit protein.
Length = 564
Score = 36.7 bits (81), Expect = 0.022
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +2
Query: 140 DSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLXWNAGEWG-CSTWLVSS 316
D K+ ++++L+ + + E +++ + W D+ L WN E+G ++ ++
Sbjct: 73 DHKKSLKVHISISLY-QIIEVDEPSQNIKLNVWMIQKWRDEYLDWNPNEYGMINSTIIPF 131
Query: 317 ERLWRPDVVLLNA 355
LW PD L N+
Sbjct: 132 HHLWIPDTYLYNS 144
>Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical
protein C33G3.3 protein.
Length = 409
Score = 36.3 bits (80), Expect = 0.030
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Frame = +2
Query: 83 ENATSLS-LMIDSLLATYDRDSPPDSKIVVNLT-LHLRHANIRESESTVRIQADLQMNWI 256
E+A L+ L I +A+ + + +N L+H + E + I L+++W
Sbjct: 33 ESAKKLAKLNIPHAIASIPPNYLSQQPVTINFAQFTLQHFELNEHLKDISIHGYLELSWH 92
Query: 257 DKRLXWNAGEWGCSTWLVSS-ERLWRP 334
D RL WN W + +V S +W P
Sbjct: 93 DDRLMWNQDTWKKNKLVVHSFHHIWVP 119
>U53337-6|AAA96188.2| 510|Caenorhabditis elegans Acetylcholine
receptor protein 10 protein.
Length = 510
Score = 35.1 bits (77), Expect = 0.069
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +2
Query: 221 VRIQADLQMNWIDKRLXWNAGEWGCST---WLVSSERLWRPDVVLLNAAATT-AGDYALR 388
+ + A L+ W+D RL W+ ++ T + ++WRPD++L N+A+ +
Sbjct: 12 IEVNAWLKYVWMDYRLQWDPLQYDNITSIRFAGGENQIWRPDILLYNSASEDFDSSFKSN 71
Query: 389 ARVSNNGSVSXI 424
V N G V+ I
Sbjct: 72 EVVYNTGEVNWI 83
>AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical
protein D2062.12 protein.
Length = 397
Score = 35.1 bits (77), Expect = 0.069
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 179 LHLRHAN-IRESESTVRIQADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWR 331
LH+ H + I++ + +++ W+D+RL WN + G T+ + +WR
Sbjct: 62 LHVDHIHDIQDEQGVLKMALTFTFTWMDERLMWNPSNYSGIRTFSTTRHEMWR 114
>U00053-1|AAZ94293.1| 548|Caenorhabditis elegans Acetylcholine
receptor protein 5 protein.
Length = 548
Score = 34.7 bits (76), Expect = 0.091
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +2
Query: 167 VNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLXWNAGEWG-CSTWLVSSERLWRPDV 340
VNL++ L ++ E ++ + + +W D+ L WN ++G + +V ++W PD
Sbjct: 133 VNLSMSLYQILDVDEHMQSIEVNVWMVQHWYDEFLDWNPVDYGMINRTIVPYHQIWIPDT 192
Query: 341 VLLNA 355
L N+
Sbjct: 193 YLYNS 197
>Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical
protein C31H5.3 protein.
Length = 554
Score = 34.3 bits (75), Expect = 0.12
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 197 NIRESESTVRIQADLQMNWIDKRLXWNAGEWG-CSTWLVSSERLWRPDVVLLNA 355
+I E + L+M+W D L W+ E+G + +W+PDV+L N+
Sbjct: 63 DIDEKHQIMNSNVWLRMSWTDHYLTWDPSEFGNIKEVRLPINNIWKPDVLLYNS 116
>AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine
receptor (63.2 kD)(acr-19) protein.
Length = 554
Score = 34.3 bits (75), Expect = 0.12
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 197 NIRESESTVRIQADLQMNWIDKRLXWNAGEWG-CSTWLVSSERLWRPDVVLLNA 355
+I E + L+M+W D L W+ E+G + +W+PDV+L N+
Sbjct: 63 DIDEKHQIMNSNVWLRMSWTDHYLTWDPSEFGNIKEVRLPINNIWKPDVLLYNS 116
>AC006679-2|AAK84465.2| 425|Caenorhabditis elegans Ligand-gated ion
channel protein 12 protein.
Length = 425
Score = 34.3 bits (75), Expect = 0.12
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 3/87 (3%)
Frame = +2
Query: 200 IRESESTVRIQADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA--ATTA 370
+ E +++ +W D L W+ EW G + +W PD + N T
Sbjct: 68 VNEQNEQIKLLIWFPQSWKDDYLVWDPDEWDGIEKITIPKSMVWLPDGYIFNTVEETDTL 127
Query: 371 GDYALRARVSNNGSVSXIKRLDISTPI 451
++ +R + V K +D+ P+
Sbjct: 128 DNHNVRVHYNGKVEVDFNKLIDLICPM 154
>Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.5 protein.
Length = 401
Score = 33.9 bits (74), Expect = 0.16
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 173 LTLHLRHANIRESESTVRIQADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRP 334
L +L+ ++E V + +L W D RL WN + ST E++W P
Sbjct: 79 LLYYLKLVEVQEPAEKVSVVLELVERWYDPRLSWNISLYSNVSTIFARQEKVWSP 133
>AY519853-1|AAR89634.1| 545|Caenorhabditis elegans acetylcholine
receptor (62.5 kD)(acr-23) protein.
Length = 545
Score = 33.9 bits (74), Expect = 0.16
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +2
Query: 155 SKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLXWNAGEWGCSTWLVS-SERLW 328
S I V L+L L + E + + + A W+D+ L W+ E+ T +++ + +W
Sbjct: 50 SPINVTLSLQLYQIIQVNEPQQYLLLNAWAVERWVDQMLGWDPSEFDNETEIMARHDDIW 109
Query: 329 RPDVVLLNA 355
PD L N+
Sbjct: 110 LPDTTLYNS 118
>AF067943-10|AAC17666.3| 545|Caenorhabditis elegans Acetylcholine
receptor protein 23 protein.
Length = 545
Score = 33.9 bits (74), Expect = 0.16
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +2
Query: 155 SKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLXWNAGEWGCSTWLVS-SERLW 328
S I V L+L L + E + + + A W+D+ L W+ E+ T +++ + +W
Sbjct: 50 SPINVTLSLQLYQIIQVNEPQQYLLLNAWAVERWVDQMLGWDPSEFDNETEIMARHDDIW 109
Query: 329 RPDVVLLNA 355
PD L N+
Sbjct: 110 LPDTTLYNS 118
>AF047656-8|AAC05109.2| 340|Caenorhabditis elegans Ligand-gated ion
channel protein 5 protein.
Length = 340
Score = 33.9 bits (74), Expect = 0.16
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Frame = +2
Query: 23 LYYSCYRFLLTCAIASAAECENATSLSLMIDSLLATYDRD-SPPDSKIVVNLTLH-LRHA 196
L S FL+ S + + L+ + TYD + P D+ V +T +
Sbjct: 4 LLNSLLTFLVLRTFGSNTTNVESNTEVLLQELFNRTYDVNVKPSDTLTTVTITPNTFLLL 63
Query: 197 NIRESESTVRIQADLQMNWIDKRLXWNAGEWGCS-TWL-VSSERLWRPDVV 343
++ +++ T+ + + W D L WN + + W+ +S R+W PDV+
Sbjct: 64 SMDQTQETILFSQEFLLKWYDPILHWNRTLFDYNREWIKISVSRVWVPDVI 114
>AC006618-5|ABB88234.1| 513|Caenorhabditis elegans Gaba/glycine
receptor family (seegbr) protein 2, isoform b protein.
Length = 513
Score = 33.9 bits (74), Expect = 0.16
Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 10/114 (8%)
Frame = +2
Query: 44 FLLTCAIASAAECENATSLSLMIDSLL----ATYDRDSPP-----DSKIVVNLTLHLRH- 193
FLL + E + + + +D+LL YD SPP + VV L +++
Sbjct: 8 FLLLYRNSPKVEASRSEPVPIYLDNLLNAGRQVYDNQSPPVQHDKEEVTVVELAMYIEGM 67
Query: 194 ANIRESESTVRIQADLQMNWIDKRLXWNAGEWGCSTWLVSSERLWRPDVVLLNA 355
++ R ++ Q W D RL N ++W+PDV NA
Sbjct: 68 SSFRTQTMDFQLDVYFQQFWRDPRLAHNETRRVLVKDKAVLHKMWKPDVYFANA 121
>AC006618-4|ABB88233.1| 546|Caenorhabditis elegans Gaba/glycine
receptor family (seegbr) protein 2, isoform a protein.
Length = 546
Score = 33.9 bits (74), Expect = 0.16
Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 10/114 (8%)
Frame = +2
Query: 44 FLLTCAIASAAECENATSLSLMIDSLL----ATYDRDSPP-----DSKIVVNLTLHLRH- 193
FLL + E + + + +D+LL YD SPP + VV L +++
Sbjct: 8 FLLLYRNSPKVEASRSEPVPIYLDNLLNAGRQVYDNQSPPVQHDKEEVTVVELAMYIEGM 67
Query: 194 ANIRESESTVRIQADLQMNWIDKRLXWNAGEWGCSTWLVSSERLWRPDVVLLNA 355
++ R ++ Q W D RL N ++W+PDV NA
Sbjct: 68 SSFRTQTMDFQLDVYFQQFWRDPRLAHNETRRVLVKDKAVLHKMWKPDVYFANA 121
>Z36753-16|CAA85338.2| 538|Caenorhabditis elegans Hypothetical
protein T09A5.3 protein.
Length = 538
Score = 33.5 bits (73), Expect = 0.21
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +2
Query: 149 PDSKIVVNLTLHLRHANIRESE-STVRIQADLQMNWIDKRLXWNAGEWG--CSTWLVSSE 319
P + V + + ++ + +++ + + A L+ W D RL WN ++ S +
Sbjct: 52 PKKALTVTMKVFIQQVLLVDAKHQMIEVNAWLKYIWTDFRLRWNPLDYENITSVRFQGED 111
Query: 320 RLWRPDVVLLN 352
++W+PD++L N
Sbjct: 112 QIWQPDILLYN 122
>AF187012-1|AAG35182.1| 538|Caenorhabditis elegans nicotinic
acetylcholine receptor-like subunit ACR-7 protein.
Length = 538
Score = 33.5 bits (73), Expect = 0.21
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +2
Query: 149 PDSKIVVNLTLHLRHANIRESE-STVRIQADLQMNWIDKRLXWNAGEWG--CSTWLVSSE 319
P + V + + ++ + +++ + + A L+ W D RL WN ++ S +
Sbjct: 52 PKKALTVTMKVFIQQVLLVDAKHQMIEVNAWLKYIWTDFRLRWNPLDYENITSVRFQGED 111
Query: 320 RLWRPDVVLLN 352
++W+PD++L N
Sbjct: 112 QIWQPDILLYN 122
>U10401-10|AAA19062.2| 476|Caenorhabditis elegans Hypothetical
protein T20B12.9 protein.
Length = 476
Score = 33.1 bits (72), Expect = 0.28
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Frame = +2
Query: 77 ECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRHANIRE-SESTVRIQADLQMN- 250
E + +L +ID+LL YD P+++ VN+T+ L + SE T D+ +
Sbjct: 9 EFNSRINLGKLIDTLLTDYDTHLLPEAE-GVNVTIELHVQGVSGISEITGDFSLDVMYSE 67
Query: 251 -WIDKRLXWNAGEWGCSTWL---VSS--ERLWRPDVVLLNAAATTAGDYALR---ARVSN 403
W D RL + C+T + VS +++W PD ++N+ +++ +
Sbjct: 68 IWQDPRLSFKHLN-VCATNITLKVSDFRKKIWTPDTCIINSKSSSIHSSPSENTFVILYE 126
Query: 404 NGSVSXIKRLDISTP 448
NG V RL++ TP
Sbjct: 127 NGLVWSNFRLNVKTP 141
>Z67737-2|CAA91537.3| 400|Caenorhabditis elegans Hypothetical
protein T01H10.2 protein.
Length = 400
Score = 32.7 bits (71), Expect = 0.37
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Frame = +2
Query: 131 YDRDSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLXWNAGEW-GCSTWL 307
YD D+P + L L+ + E V + ++ W D RL WNA + T+
Sbjct: 64 YDPDAPKRYNYSIML-YSLKLVEVNEPAEKVAVVMEIMEYWYDIRLSWNASLYDDIDTFY 122
Query: 308 VSSERLWRPDVVLLNA 355
+W P + A
Sbjct: 123 TRQSNVWSPTLSAFGA 138
>Z92830-9|CAB07361.2| 461|Caenorhabditis elegans Hypothetical
protein F11A5.10 protein.
Length = 461
Score = 31.9 bits (69), Expect = 0.64
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 14/162 (8%)
Frame = +2
Query: 50 LTCAIASAAECENATSLSLMIDSLLATYD-RDSPPDSK---IVVNLTLHLRH-ANIRESE 214
LT I E + ++ + YD R PP +VV++ + LR + I
Sbjct: 48 LTSPIHIPIEQPQTSDSKILAHLFTSGYDFRVRPPTDNGGPVVVSVNMLLRTISKIDVVN 107
Query: 215 STVRIQADLQMNWIDKRLXWNAGEWGCSTWLVSS--ERLWRPDVVLLN---AAATTAGDY 379
Q L+ +WIDKRL + G +++ + ++W PD N A T
Sbjct: 108 MEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHTIDKP 167
Query: 380 ALRARVSNNGSVSXIKRLD--ISTPIF--YAVRQLAQXHADL 493
+ R+ N+G+V R+ +S P++ Y + Q DL
Sbjct: 168 NVLIRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDL 209
>U14524-1|AAA50785.1| 461|Caenorhabditis elegans
avermectin-sensitive glutamate-gated chloride channel
GluCl alpha protein.
Length = 461
Score = 31.9 bits (69), Expect = 0.64
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 14/162 (8%)
Frame = +2
Query: 50 LTCAIASAAECENATSLSLMIDSLLATYD-RDSPPDSK---IVVNLTLHLRH-ANIRESE 214
LT I E + ++ + YD R PP +VV++ + LR + I
Sbjct: 48 LTSPIHIPIEQPQTSDSKILAHLFTSGYDFRVRPPTDNGGPVVVSVNMLLRTISKIDVVN 107
Query: 215 STVRIQADLQMNWIDKRLXWNAGEWGCSTWLVSS--ERLWRPDVVLLN---AAATTAGDY 379
Q L+ +WIDKRL + G +++ + ++W PD N A T
Sbjct: 108 MEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHTIDKP 167
Query: 380 ALRARVSNNGSVSXIKRLD--ISTPIF--YAVRQLAQXHADL 493
+ R+ N+G+V R+ +S P++ Y + Q DL
Sbjct: 168 NVLIRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDL 209
>AF038606-6|AAB92023.2| 464|Caenorhabditis elegans Hypothetical
protein C04C3.2 protein.
Length = 464
Score = 31.9 bits (69), Expect = 0.64
Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 8/121 (6%)
Frame = +2
Query: 107 MIDSLLATYDRDSPPDSK----IVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKRLX 271
+I+++ YD+ P ++ ++V++T+ L +RE++ W D +L
Sbjct: 44 LIETIQRRYDKRVRPFAESNRPVIVHMTIVLGILTEVRENQQVASFVISHVQKWRDPKLA 103
Query: 272 WNAGEWGCSTWLVSSERL-WRPDVVLLNAAAT--TAGDYALRARVSNNGSVSXIKRLDIS 442
WN + T +V L W P + + N+ T D R+ + G V +S
Sbjct: 104 WNPADHSGLTQVVMPRSLVWVPKLFIYNSMDTKDMLTDDRYDVRIQHTGHVKVNSPQFVS 163
Query: 443 T 445
T
Sbjct: 164 T 164
>Z81085-2|CAB03114.2| 618|Caenorhabditis elegans Hypothetical
protein F46F3.2 protein.
Length = 618
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = +2
Query: 131 YDRDSPP----DSKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKRLXWNAGEWGC 295
YD PP D + V + + ++ +N S + A ++M+WID RL +
Sbjct: 259 YDARQPPSLHVDDTVTVKVGIAVQSMSNFELSTMDYDLDAWVRMSWIDPRLRHDLSRPIL 318
Query: 296 STWLVSSERLWRPDVVLLNAAATT 367
+ +WRPD + N+ +T
Sbjct: 319 VNDYTFLKMIWRPDPIFTNSKYST 342
>Z83120-8|CAE46678.2| 511|Caenorhabditis elegans Hypothetical
protein R06A4.10b protein.
Length = 511
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +2
Query: 155 SKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLXWNAGEWGCSTWLVSSER-LW 328
S I V+ ++ L ++ E + + + A + W D+ L W+ ++G T ++ +W
Sbjct: 5 SPIEVHFSMELYQIISVNEPQQFLMLNAWVVERWTDRLLGWDPEKFGNVTEIMLPHHFIW 64
Query: 329 RPDVVLLNA 355
PD L N+
Sbjct: 65 LPDTTLYNS 73
>Z83120-7|CAB51466.2| 514|Caenorhabditis elegans Hypothetical
protein R06A4.10a protein.
Length = 514
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +2
Query: 155 SKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLXWNAGEWGCSTWLVSSER-LW 328
S I V+ ++ L ++ E + + + A + W D+ L W+ ++G T ++ +W
Sbjct: 5 SPIEVHFSMELYQIISVNEPQQFLMLNAWVVERWTDRLLGWDPEKFGNVTEIMLPHHFIW 64
Query: 329 RPDVVLLNA 355
PD L N+
Sbjct: 65 LPDTTLYNS 73
>AY523515-1|AAR98637.1| 553|Caenorhabditis elegans acetylcholine
receptor 20 (63.9kD) alternative variant a protein.
Length = 553
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +2
Query: 155 SKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLXWNAGEWGCSTWLVSSER-LW 328
S I V+ ++ L ++ E + + + A + W D+ L W+ ++G T ++ +W
Sbjct: 47 SPIEVHFSMELYQIISVNEPQQFLMLNAWVVERWTDRLLGWDPEKFGNVTEIMLPHHFIW 106
Query: 329 RPDVVLLNA 355
PD L N+
Sbjct: 107 LPDTTLYNS 115
>Z67737-6|CAA91540.3| 399|Caenorhabditis elegans Hypothetical
protein T01H10.7 protein.
Length = 399
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +2
Query: 131 YDRDSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLXWNAGEWGCSTWL- 307
Y+ +P V+L +L+ + E E V + ++ W D R+ W++ +G L
Sbjct: 64 YNPLAPKRFNYTVSL-YYLKLVEVIEPEEKVSVVLEMAEYWYDPRIAWDSSLYGDIKMLH 122
Query: 308 VSSERLWRPDVVL 346
+ +++W P + L
Sbjct: 123 MRQDKVWSPTLSL 135
>AF026215-3|AAB71323.3| 563|Caenorhabditis elegans Hypothetical
protein F09G2.5 protein.
Length = 563
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 239 LQMNWIDKRLXWNAGEWGCSTWLVSSERLWRPDVVLLNA 355
L M W D+RL N T + ++R+W PD+ +N+
Sbjct: 175 LAMGWFDRRLAHNCTHPILVTSKLIADRIWYPDLYFVNS 213
>U28928-2|AAA68335.2| 329|Caenorhabditis elegans Hypothetical
protein C44B7.4 protein.
Length = 329
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 14 VDDLYYSCYRFLLTCAIASAAECENATSLS 103
+D YY CYR C I+ A C+N+T L+
Sbjct: 124 LDGGYYRCYRSHEFCLISDAILCKNSTILN 153
>Z49907-4|CAA90086.1| 454|Caenorhabditis elegans Hypothetical
protein B0491.4 protein.
Length = 454
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +2
Query: 200 IRESESTVRIQADLQMNWIDKRLXWN-AGEWGC--STWLVSSERLWRPDVV 343
++ S + D+ +NW D+R+ W+ GE+ ++ +S +W P V+
Sbjct: 83 VKGSSYQFNVFGDIYLNWKDERMKWDKKGEFENYEHLYIFNSSAIWTPHVI 133
>AF498370-1|AAN65376.1| 550|Caenorhabditis elegans GABA-A receptor
subunit protein.
Length = 550
Score = 28.3 bits (60), Expect = 7.9
Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 10/150 (6%)
Frame = +2
Query: 92 TSLSLMIDSLLATYD-RDSPPDSKIVVNLTLHLRHAN---IRESESTVRIQADLQMNWID 259
++ S ++ LL YD R P + LT+ + A+ I E + + L W D
Sbjct: 52 SNASSLLSDLLLDYDIRLRPGFGGDALLLTMDIIIASFDSISEVDMDYTLTMYLHQYWTD 111
Query: 260 KRLXWNAGEWGCSTWLVS---SERLWRPDVVLLNAAATTAGDYALR---ARVSNNGSVSX 421
+RL W + E +S S+ +W PD L N + + R R++ +G V+
Sbjct: 112 ERLRW-SNEIPIDEMTLSGEFSQNIWVPDTFLANDKHSYLHEVTERNKMLRINVDGKVAY 170
Query: 422 IKRLDISTPIFYAVRQLAQXHADLHVQVRS 511
RL + +R + + V++ S
Sbjct: 171 GMRLTSTLSCSMNLRNFSLDSQNCTVEIES 200
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,353,749
Number of Sequences: 27780
Number of extensions: 350145
Number of successful extensions: 1068
Number of sequences better than 10.0: 96
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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