Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_M07
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029...    30   2.2  
04_01_0065 - 636957-637082,637165-637251,637365-637625,637695-63...    29   6.6  

>05_03_0366 -
           13102147-13102281,13102560-13102739,13102791-13102992,
           13104385-13104575
          Length = 235

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 304 HQPSAAAPLPCVPXQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVRGGS 134
           H P AAA  P VP +    P  L +   S GG GL   S S +  G  + D G+ GGS
Sbjct: 7   HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGI-GGS 62


>04_01_0065 -
           636957-637082,637165-637251,637365-637625,637695-638100,
           640036-640223
          Length = 355

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = -2

Query: 256 FVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVRGGSPDRTLRGASRS*GTVMLRF 77
           ++  +H   C+    G G+ N+S+  +    D +    G SPD  L G   +   ++ R 
Sbjct: 6   YLQSLHFN-CIRLPDGAGVVNMSLPIVLAIGDREKEEIGSSPDVALHGPDGAVLAILRRV 64

Query: 76  RILPH 62
            I PH
Sbjct: 65  EIYPH 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,470,022
Number of Sequences: 37544
Number of extensions: 398824
Number of successful extensions: 1091
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)