Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_M07
(893 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 41 1e-05
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 41 1e-05
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 41 2e-05
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 39 7e-05
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 39 7e-05
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 39 7e-05
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 39 7e-05
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 39 7e-05
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 37 3e-04
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 36 5e-04
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 35 9e-04
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 35 9e-04
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 35 9e-04
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 35 0.001
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 35 0.001
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 34 0.002
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 34 0.002
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 32 0.006
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 28 0.10
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 24 2.2
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 6.6
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 8.7
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 41.1 bits (92), Expect = 1e-05
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +2
Query: 191 NIRESESTVRIQADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLXRPDVVLLNAA-ATTA 364
++ E + A L++ W+D L WN E+ G ++ +L +PD+++ N+A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 365 GDYALRARVSNNSSVL 412
G Y V++N S L
Sbjct: 153 GTYQTNVVVTHNGSCL 168
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 41.1 bits (92), Expect = 1e-05
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +2
Query: 191 NIRESESTVRIQADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLXRPDVVLLNAA-ATTA 364
++ E + A L++ W+D L WN E+ G ++ +L +PD+++ N+A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 365 GDYALRARVSNNSSVL 412
G Y V++N S L
Sbjct: 153 GTYQTNVVVTHNGSCL 168
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 40.7 bits (91), Expect = 2e-05
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +2
Query: 191 NIRESESTVRIQADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLXRPDVVLLNAA-ATTA 364
++ E + A L++ W+D L WN E+ G ++ +L +PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 365 GDYALRARVSNNSSVL 412
G Y V++N S L
Sbjct: 85 GTYQTSVVVTHNGSCL 100
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 38.7 bits (86), Expect = 7e-05
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +2
Query: 191 NIRESESTVRIQADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLXRPDVVLLNAA-ATTA 364
++ E + A L++ W+D L WN E+ G ++ +L +PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 365 GDYALRARVSNNSSVL 412
G Y V+++ S L
Sbjct: 85 GTYQTSVVVTHDGSCL 100
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 38.7 bits (86), Expect = 7e-05
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +2
Query: 191 NIRESESTVRIQADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLXRPDVVLLNAA-ATTA 364
++ E + A L++ W+D L WN E+ G ++ +L +PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 365 GDYALRARVSNNSSVL 412
G Y V+++ S L
Sbjct: 85 GTYQTSVVVTHDGSCL 100
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 38.7 bits (86), Expect = 7e-05
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +2
Query: 191 NIRESESTVRIQADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLXRPDVVLLNAA-ATTA 364
++ E + A L++ W+D L WN E+ G ++ +L +PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 365 GDYALRARVSNNSSVL 412
G Y V+++ S L
Sbjct: 85 GTYQTSVVVTHDGSCL 100
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 38.7 bits (86), Expect = 7e-05
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +2
Query: 191 NIRESESTVRIQADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLXRPDVVLLNAA-ATTA 364
++ E + A L++ W+D L WN E+ G ++ +L +PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 365 GDYALRARVSNNSSVL 412
G Y V+++ S L
Sbjct: 85 GTYQTSVVVTHDGSCL 100
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 38.7 bits (86), Expect = 7e-05
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +2
Query: 191 NIRESESTVRIQADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLXRPDVVLLNAA-ATTA 364
++ E + A L++ W+D L WN E+ G ++ +L +PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 365 GDYALRARVSNNSSVL 412
G Y V+++ S L
Sbjct: 85 GTYQTSVVVTHDGSCL 100
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 36.7 bits (81), Expect = 3e-04
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Frame = +2
Query: 119 QRTIGTPPPHSKIVVNLTLHLGHANIRESESTVRIQADLQMNWIDKRLXWNAGEWGCSTW 298
+R +G + LTL + ++ E + L++ W D + WN ++G
Sbjct: 39 ERPVGNESEPLVLSFGLTL-MQIIDVDEKNQLLITNLWLKLEWNDVNMRWNVSDYGGVRD 97
Query: 299 L-VSSERLXRPDVVLLNAA-ATTAGDYALRARVSNNSSVL 412
L + RL +PDV++ N+A G Y V NN + L
Sbjct: 98 LRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGTCL 137
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 35.9 bits (79), Expect = 5e-04
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +2
Query: 155 IVVNLTLHLGHA---NIRESESTVRIQADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLX 322
+VV L L L N+++ T + L+ W D + W+ E+G T L V SE +
Sbjct: 46 VVVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIW 103
Query: 323 RPDVVLLNAA 352
PD+VL N A
Sbjct: 104 LPDIVLYNNA 113
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 35.1 bits (77), Expect = 9e-04
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Frame = +2
Query: 191 NIRESESTVRIQADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLXRPDVVLLNAAATTAG 367
N+ E ++ L+ W D +L W+ ++ G + +++ +PD+VL N A G
Sbjct: 65 NVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNA---DG 121
Query: 368 DYALRARVSNNSSVLLHKALGTLTLPSSM 454
+Y +R + S+VL++ L +P ++
Sbjct: 122 NYEVRYK----SNVLIYPNGDVLWVPPAI 146
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 35.1 bits (77), Expect = 9e-04
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 233 LQMNWIDKRLXWNAGEWGCSTWL-VSSERLXRPDVVLLNAA 352
++ +W D +L W+ E+G L V S+ + RPD+VL N A
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNA 117
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 35.1 bits (77), Expect = 9e-04
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +2
Query: 122 RTIGTPPPHSKIVVNLTL-HLGHANIRESESTVRIQADLQMNWIDKRLXWNAGEW-GCST 295
R +G + + L L L N++ T + ++ W D +L WN ++ G T
Sbjct: 37 RPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYKLKWNPDDYGGVDT 94
Query: 296 WLVSSERLXRPDVVLLNAA 352
V SE + PD+VL N A
Sbjct: 95 LHVPSEHIWLPDIVLYNNA 113
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 34.7 bits (76), Expect = 0.001
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 233 LQMNWIDKRLXWNAGEWGCSTWL-VSSERLXRPDVVLLNAA 352
++ +W D +L W E+G L V S+ + RPD+VL N A
Sbjct: 81 VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWRPDIVLYNNA 121
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 34.7 bits (76), Expect = 0.001
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 233 LQMNWIDKRLXWNAGEWGCSTWL-VSSERLXRPDVVLLNAA 352
++ +W D +L W E+G L V S+ + RPD+VL N A
Sbjct: 81 VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWRPDIVLYNNA 121
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 34.3 bits (75), Expect = 0.002
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +2
Query: 155 IVVNLTLHLGHA-NIRESESTVRIQADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLXRP 328
+V L+LH H ++ E + + W D L WNA E+ G V R+ RP
Sbjct: 33 VVFGLSLH--HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRP 90
Query: 329 DVVLLNAA 352
D +L N A
Sbjct: 91 DTILYNNA 98
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 34.3 bits (75), Expect = 0.002
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 233 LQMNWIDKRLXWNAGEWGCSTWL-VSSERLXRPDVVLLNAA 352
++ W D +L WN E+G L V SE + PD+VL N A
Sbjct: 86 VEQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVLYNNA 126
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 32.3 bits (70), Expect = 0.006
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +2
Query: 137 PPPHSKIVVNLTLHLGHANIRESESTVRIQADLQMNWIDKRLXWNAGEW-GCSTWLVSSE 313
P + ++ L + H N+ E TV L++ W L W + E+ ++ V S
Sbjct: 54 PEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEFDSINSIRVKSY 113
Query: 314 RLXRPDVVL 340
+ PD+V+
Sbjct: 114 EIWVPDIVM 122
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 28.3 bits (60), Expect = 0.10
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = +2
Query: 194 IRESESTVRIQADLQMNWIDKRLXWNAGEWGCSTWLVSSERLXRPDVVLLN 346
I E + T + + +W+D+RL + G+ + + R+ +PD N
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 23.8 bits (49), Expect = 2.2
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +2
Query: 188 ANIRESESTVRIQADLQMNWIDKRLXWN--AGEWGCSTWLVSSERLXRPDVVLLN 346
A I + + +Q + W+D+RL +N G T L + R+ PD+ N
Sbjct: 71 ATISDIKMEYSVQLTFREQWLDERLRFNDFGGRLKYLT-LTDASRVWMPDLFFSN 124
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.2 bits (45), Expect = 6.6
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -2
Query: 298 PSAAAPLPCVPXQS 257
PSA AP+P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 21.8 bits (44), Expect = 8.7
Identities = 12/51 (23%), Positives = 20/51 (39%)
Frame = +2
Query: 194 IRESESTVRIQADLQMNWIDKRLXWNAGEWGCSTWLVSSERLXRPDVVLLN 346
+ E + + + +W D RL + S + ER+ RPD N
Sbjct: 76 VSELDMDYSMDCYFRQSWRDSRLSFLGPIKSLSLSIKMLERIWRPDTYFYN 126
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,771
Number of Sequences: 438
Number of extensions: 3490
Number of successful extensions: 24
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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