Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_M06
         (859 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1747 + 29188568-29188715,29188793-29189541                       32   0.67 
06_01_1041 - 8174344-8174574                                           28   8.3  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   8.3  
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892     28   8.3  

>07_03_1747 + 29188568-29188715,29188793-29189541
          Length = 298

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +1

Query: 400 PPPGTTLSAPVYLITAPSPA*SAWTLALQFLCS*TIGPTTCXLARSSSVLG 552
           PPP TT++  V L   P+ A S   +  QF+C+     TTC  + S S+ G
Sbjct: 213 PPPTTTMAQHVVL---PTAAASCHQMQDQFVCARAAETTTCCWSESESLPG 260


>06_01_1041 - 8174344-8174574
          Length = 76

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 339 WLVSSE-RLWRPDVVLLNAAATTAGDYALRARVSNNGSVSCIKR 467
           WL S E R WR  +V   AAA  A    LR R  + G  SC++R
Sbjct: 17  WLPSLEQRRWRRRLVREAAAAAVA----LRTRSGDGGDGSCVRR 56


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 429 GRGERSPRRWLQPRLAVPRQASTSVPRTP 343
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
          Length = 291

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +3

Query: 330 CSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSCIKRLDISTPISMQLDN 506
           CS++L    R+W     +++   +      LRA   +N S +    +D+STP +  LDN
Sbjct: 137 CSSFLA---RIWNNTTPIVDTGLSPGYAALLRALCPSNASATATTAIDVSTPAT--LDN 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,091,076
Number of Sequences: 37544
Number of extensions: 447466
Number of successful extensions: 1147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)