Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_M06
(859 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 62 8e-12
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 59 4e-11
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 59 4e-11
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 59 6e-11
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 58 1e-10
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 58 1e-10
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 57 2e-10
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 56 3e-10
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 56 3e-10
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 56 4e-10
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 53 3e-09
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 53 3e-09
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 53 4e-09
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 53 4e-09
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 52 7e-09
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 52 9e-09
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 51 2e-08
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 48 1e-07
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 48 1e-07
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 46 4e-07
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 44 2e-06
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 42 1e-05
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 38 1e-04
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 33 0.003
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 33 0.003
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 33 0.003
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 31 0.010
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 30 0.031
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 23 2.7
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 61.7 bits (143), Expect = 8e-12
Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 6/143 (4%)
Frame = +3
Query: 195 KIVVNLTLHL--RHANIRESESTVRILADLQMNWIDERLXWNAGEW-GCSTWLVSSERLW 365
+I N+T+ L + + S + + + + + W D L W ++ G + V S+ +W
Sbjct: 66 QIANNVTMQLLPKLMEFDDWTSVMELHSWMTLMWTDSHLSWKPSDFDGINYIYVKSDDIW 125
Query: 366 RPDVVLLNAAATT---AGDYALRARVSNNGSVSCIKRLDISTPISMQLDNWPNDMXTCTF 536
PD+ + N+ T G V ++GSVSC+ + + +WP D C
Sbjct: 126 VPDISVYNSGDMTFDQTGIPPTTCLVFSSGSVSCVPSVKHVAKCATDFSSWPYDTHRCRI 185
Query: 537 KFGSRMHNXDEMDFVIDKXIYSM 605
FGS +H+ +E++ +DK + M
Sbjct: 186 NFGSWVHSGEEVNIFLDKKGFHM 208
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 59.3 bits (137), Expect = 4e-11
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Frame = +3
Query: 234 NIRESESTVRILADLQMNWIDERLXWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA- 407
++ E + A L++ W+D L WN E+G L ++ +LW+PD+++ N+A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 408 GDYALRARVSNNGSVSCIKRLDISTPISMQLDNWPNDMXTCTFKFGSRMHNXDEMDFVI 584
G Y V++NGS + + + + +P D C KFGS ++ +++D V+
Sbjct: 153 GTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQVDLVL 211
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 59.3 bits (137), Expect = 4e-11
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Frame = +3
Query: 234 NIRESESTVRILADLQMNWIDERLXWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA- 407
++ E + A L++ W+D L WN E+G L ++ +LW+PD+++ N+A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 408 GDYALRARVSNNGSVSCIKRLDISTPISMQLDNWPNDMXTCTFKFGSRMHNXDEMDFVI 584
G Y V++NGS + + + + +P D C KFGS ++ +++D V+
Sbjct: 153 GTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQVDLVL 211
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 58.8 bits (136), Expect = 6e-11
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Frame = +3
Query: 234 NIRESESTVRILADLQMNWIDERLXWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA- 407
++ E + A L++ W+D L WN E+G L ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 408 GDYALRARVSNNGSVSCIKRLDISTPISMQLDNWPNDMXTCTFKFGSRMHNXDEMDFVI 584
G Y V++NGS + + + + +P D C KFGS ++ +++D V+
Sbjct: 85 GTYQTSVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 58.0 bits (134), Expect = 1e-10
Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Frame = +3
Query: 234 NIRESESTVRILADLQMNWIDERLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 407
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 408 GDYALRARVSNNGSVSCIKRLDISTPISMQLDNWPNDMXTCTFKFGSRMHNXDEMDFVI 584
G Y V+++GS + + M + +P D C KFGS ++ +++D V+
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 57.6 bits (133), Expect = 1e-10
Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Frame = +3
Query: 234 NIRESESTVRILADLQMNWIDERLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 407
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 408 GDYALRARVSNNGSVSCIKRLDISTPISMQLDNWPNDMXTCTFKFGSRMHNXDEMDFVI 584
G Y V+++GS + + M + +P D C KFGS ++ +++D V+
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 56.8 bits (131), Expect = 2e-10
Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Frame = +3
Query: 234 NIRESESTVRILADLQMNWIDERLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 407
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 408 GDYALRARVSNNGSVSCIKRLDISTPISMQLDNWPNDMXTCTFKFGSRMHNXDEMDFVI 584
G Y V+++GS + + + + +P D C KFGS ++ +++D V+
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 56.4 bits (130), Expect = 3e-10
Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Frame = +3
Query: 234 NIRESESTVRILADLQMNWIDERLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 407
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 408 GDYALRARVSNNGSVSCIKRLDISTPISMQLDNWPNDMXTCTFKFGSRMHNXDEMDFVI 584
G Y V+++GS + + + + +P D C KFGS ++ +++D V+
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKIDIAWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 56.4 bits (130), Expect = 3e-10
Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Frame = +3
Query: 234 NIRESESTVRILADLQMNWIDERLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 407
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 408 GDYALRARVSNNGSVSCIKRLDISTPISMQLDNWPNDMXTCTFKFGSRMHNXDEMDFVI 584
G Y V+++GS + + + + +P D C KFGS ++ +++D V+
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFGSTCKIDIAWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 56.0 bits (129), Expect = 4e-10
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 6/136 (4%)
Frame = +3
Query: 195 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDERLXWNAGEWG-CSTWLVSSERLWR 368
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 369 PDVVLLNAAATTAGDYALRAR----VSNNGSVSCIKRLDISTPISMQLDNWPNDMXTCTF 536
PD+VL N A G+Y +R + + NG V + + ++ + +P D TC
Sbjct: 111 PDIVLFNNAD---GNYEVRYKSNVLIYPNGDVLWVPPAIYQSSCTIDVTYFPFDQQTCIM 167
Query: 537 KFGSRMHNXDEMDFVI 584
KFGS N D++ +
Sbjct: 168 KFGSWTFNGDQVSLAL 183
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 53.2 bits (122), Expect = 3e-09
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 3/130 (2%)
Frame = +3
Query: 195 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDERLXWNAGEWGCSTWL-VSSERLWR 368
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 369 PDVVLL-NAAATTAGDYALRARVSNNGSVSCIKRLDISTPISMQLDNWPNDMXTCTFKFG 545
PD+VL NA A +A + + G V + + ++ +P D TC KFG
Sbjct: 113 PDIVLYNNADGNFEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFG 172
Query: 546 SRMHNXDEMD 575
S ++ ++D
Sbjct: 173 SWTYDGFKVD 182
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 53.2 bits (122), Expect = 3e-09
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Frame = +3
Query: 276 LQMNWIDERLXWNAGEWGCSTWL-VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGS 449
++ +W D +L W+ E+G L V S+ +WRPD+VL NA A +A ++ G
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGR 136
Query: 450 VSCIKRLDISTPISMQLDNWPNDMXTCTFKFGSRMHNXDEMD 575
V + + ++ +P D TC KFGS ++ ++D
Sbjct: 137 VEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVD 178
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 52.8 bits (121), Expect = 4e-09
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
Frame = +3
Query: 276 LQMNWIDERLXWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGS 449
L++ W D + WN ++G L + RLW+PDV++ N+A G Y V NNG+
Sbjct: 76 LKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGT 135
Query: 450 VSCIKRLDISTPISMQLDNWPNDMXTCTFKFGSRMHNXDEMDFVIDK----XIYSMFXXX 617
+ + + + +P D C KFGS ++ ++D + I S
Sbjct: 136 CLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQLDLQLQDEAGGDISSFITNG 195
Query: 618 AWDV 629
WD+
Sbjct: 196 EWDL 199
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 52.8 bits (121), Expect = 4e-09
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Frame = +3
Query: 276 LQMNWIDERLXWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYAL----RARVSN 440
++ W D +L WN E+G L V SE +W PD+VL N A G+Y + +A +
Sbjct: 86 VEQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVLYNNA---DGNYEVTLMTKATLKY 142
Query: 441 NGSVSCIKRLDISTPISMQLDNWPNDMXTCTFKFGSRMHNXDEMD 575
G VS + + ++ +P D +C KFGS +N ++D
Sbjct: 143 TGDVSWKPPAIYKSSCEINVEYFPFDEQSCIMKFGSWTYNGAQVD 187
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 52.0 bits (119), Expect = 7e-09
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 5/131 (3%)
Frame = +3
Query: 198 IVVNLTLHLRHA---NIRESESTVRILADLQMNWIDERLXWNAGEWGCSTWL-VSSERLW 365
+VV L L L N+++ T + L+ W D + W+ E+G T L V SE +W
Sbjct: 46 VVVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIW 103
Query: 366 RPDVVLLNAAATTAGDYAL-RARVSNNGSVSCIKRLDISTPISMQLDNWPNDMXTCTFKF 542
PD+VL N A G + +A + G V + + + +P D TC KF
Sbjct: 104 LPDIVLYNNADGEYGVTTMTKAILHYTGKVLWTPPAIFKSSCEIDVRYFPFDQQTCFMKF 163
Query: 543 GSRMHNXDEMD 575
GS ++ ++D
Sbjct: 164 GSWTYDGIQID 174
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 51.6 bits (118), Expect = 9e-09
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
Frame = +3
Query: 204 VNLTLHLRHANIRESESTVRILADLQMNWIDERLXWNAGEW-GCSTWLVSSERLWRPDVV 380
++ L ++H N+ E TV L++ W L W + E+ ++ V S +W PD+V
Sbjct: 62 IDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIV 121
Query: 381 L--LNAAATTAGDYALRARVSNNGSVSCIKRLDISTPISMQLDN--WPNDMXTCTFKFGS 548
+ + + ++ V N+G++ C+ TP+ + D+ WP D+ CT S
Sbjct: 122 MHSVTSVGIDLEMPSVECIVFNSGTILCVP-FTTYTPV-CEYDHTWWPYDILNCTIHIAS 179
Query: 549 RMHNXDEM 572
H +E+
Sbjct: 180 WSHGSNEI 187
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 50.8 bits (116), Expect = 2e-08
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Frame = +3
Query: 195 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDERLXWNAGEWGCSTWL-VSSERLWR 368
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 369 PDVVLLNAAATTAGDYAL----RARVSNNGSVSCIKRLDISTPISMQLDNWPNDMXTCTF 536
PD+VL N A G+Y + +A V +G V + S+ ++ +P D+ TC
Sbjct: 113 PDIVLYNNA---DGNYEVTLMTKATVYYSGLVVWQPPAVYKSSCSIDVEFFPYDVQTCVL 169
Query: 537 KFGSRMHNXDEMD 575
K GS ++ ++D
Sbjct: 170 KLGSWTYDGFKVD 182
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 48.0 bits (109), Expect = 1e-07
Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 6/143 (4%)
Frame = +3
Query: 165 RTIGSLPPHSKIVVNLTL-HLRHANIRESESTVRILADLQMNWIDERLXWNAGEWG-CST 338
R +G+ + + L L L N++ T + ++ W D +L WN ++G T
Sbjct: 37 RPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYKLKWNPDDYGGVDT 94
Query: 339 WLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSCIKRLDISTPISMQLDN 506
V SE +W PD+VL N A G+Y + +A + + G V + + ++
Sbjct: 95 LHVPSEHIWLPDIVLYNNA---DGNYEVTIMTKAILHHTGKVVWKPPAIYKSFCEIDVEY 151
Query: 507 WPNDMXTCTFKFGSRMHNXDEMD 575
+P D TC KFGS ++ +D
Sbjct: 152 FPFDEQTCFMKFGSWTYDGYTVD 174
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 47.6 bits (108), Expect = 1e-07
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
Frame = +3
Query: 237 IRESESTVRILADLQMNWIDERLXWNAGEWGCSTWLVSSERLWRPDVVLLNAAAT---TA 407
I E + T + + +W+D RL + G+ + + R+W+PD N + T
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLARIWKPDTYFYNGKHSYLHTI 103
Query: 408 GDYALRARVSNNGSVSCIKRLDISTPISMQLDNWPNDMXTCTFKFGS 548
R+ +G V RL I M L+N+P D C +FGS
Sbjct: 104 TSPNKFVRLYQDGRVLYSSRLTIKAGCPMNLENFPMDTQRCPLQFGS 150
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 46.0 bits (104), Expect = 4e-07
Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 3/129 (2%)
Frame = +3
Query: 198 IVVNLTLHLRHANIRESESTVRILADLQMNWIDERLXWNAGEW-GCSTWLVSSERLWRPD 374
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 375 VVLLNAAATTAGDYALRAR--VSNNGSVSCIKRLDISTPISMQLDNWPNDMXTCTFKFGS 548
+L N A + VS+ G V + + + ++ +P D C K+ S
Sbjct: 92 TILYNNADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCDIDVEFFPFDEQRCVLKWAS 151
Query: 549 RMHNXDEMD 575
++ +++
Sbjct: 152 WTYDGYQLE 160
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 44.0 bits (99), Expect = 2e-06
Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 7/130 (5%)
Frame = +3
Query: 180 LPPHSK---IVVNLTLHLRHAN-IRESESTVRILADLQMNWIDERLXWNAGEWGCSTWLV 347
LP H K VV + +R + E + + + +W D RL + S +
Sbjct: 53 LPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRDSRLSFLGPIKSLSLSIK 112
Query: 348 SSERLWRPDVVLLNAAATTAGDYALR---ARVSNNGSVSCIKRLDISTPISMQLDNWPND 518
ER+WRPD N + + R+S +G + RL I M+L N+P D
Sbjct: 113 MLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSMRLTIKAKCPMELRNFPMD 172
Query: 519 MXTCTFKFGS 548
+C GS
Sbjct: 173 RQSCPLILGS 182
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 41.5 bits (93), Expect = 1e-05
Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 6/133 (4%)
Frame = +3
Query: 201 VVNLTLHLRH-ANIRESESTVRILADLQMNWIDERLXWN--AGEWGCSTWLVSSERLWRP 371
+V + L +R A I + + + + W+DERL +N G T L + R+W P
Sbjct: 60 IVRVNLFVRSIATISDIKMEYSVQLTFREQWLDERLRFNDFGGRLKYLT-LTDASRVWMP 118
Query: 372 DVVLLNAAATTAGDYAL---RARVSNNGSVSCIKRLDISTPISMQLDNWPNDMXTCTFKF 542
D+ N + + R+ NGSV R+ ++ M L +P D C+ +
Sbjct: 119 DLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLSCPMNLKLYPLDRQVCSLRM 178
Query: 543 GSRMHNXDEMDFV 581
S D++ F+
Sbjct: 179 ASYGWTTDDLVFL 191
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 37.9 bits (84), Expect = 1e-04
Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 3/107 (2%)
Frame = +3
Query: 237 IRESESTVRILADLQMNWIDERLXWNAGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDY 416
I E I L W DERL ++ E + +E++W PD N + D
Sbjct: 75 ISEVNMDYTITMYLNQYWKDERLAFSQEEEVLTLSGDFAEKIWVPDTFFANDKNSFLHDV 134
Query: 417 ALR---ARVSNNGSVSCIKRLDISTPISMQLDNWPNDMXTCTFKFGS 548
R R+S +GSV+ R + M L +P D CT + S
Sbjct: 135 TERNKLVRLSGDGSVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIES 181
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 33.1 bits (72), Expect = 0.003
Identities = 34/149 (22%), Positives = 61/149 (40%), Gaps = 4/149 (2%)
Frame = +3
Query: 147 STRSSQRTIGSLPPHSKIVVNLT-LHLRHANIRESESTVRILADLQMNWIDERLXW-NAG 320
STR +R + P + VN++ L L A+ ES + LQ W D RL + N
Sbjct: 71 STRYDKRLLP--PVQGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRS 128
Query: 321 EWGCSTWLVSSERLWRPDV--VLLNAAATTAGDYALRARVSNNGSVSCIKRLDISTPISM 494
++ + + +W PD ++ R+ NG+V+ + R +
Sbjct: 129 QYEFLNAIHHYDDIWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQG 188
Query: 495 QLDNWPNDMXTCTFKFGSRMHNXDEMDFV 581
+L+ +P D C+F S + + +V
Sbjct: 189 RLNIFPFDDPLCSFAIESISYEQTAITYV 217
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 33.1 bits (72), Expect = 0.003
Identities = 34/149 (22%), Positives = 61/149 (40%), Gaps = 4/149 (2%)
Frame = +3
Query: 147 STRSSQRTIGSLPPHSKIVVNLT-LHLRHANIRESESTVRILADLQMNWIDERLXW-NAG 320
STR +R + P + VN++ L L A+ ES + LQ W D RL + N
Sbjct: 71 STRYDKRLLP--PVQGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRS 128
Query: 321 EWGCSTWLVSSERLWRPDV--VLLNAAATTAGDYALRARVSNNGSVSCIKRLDISTPISM 494
++ + + +W PD ++ R+ NG+V+ + R +
Sbjct: 129 QYEFLNAIHHYDDIWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQG 188
Query: 495 QLDNWPNDMXTCTFKFGSRMHNXDEMDFV 581
+L+ +P D C+F S + + +V
Sbjct: 189 RLNIFPFDDPLCSFAIESISYEQTAITYV 217
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 33.1 bits (72), Expect = 0.003
Identities = 34/149 (22%), Positives = 61/149 (40%), Gaps = 4/149 (2%)
Frame = +3
Query: 147 STRSSQRTIGSLPPHSKIVVNLT-LHLRHANIRESESTVRILADLQMNWIDERLXW-NAG 320
STR +R + P + VN++ L L A+ ES + LQ W D RL + N
Sbjct: 71 STRYDKRLLP--PVQGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRS 128
Query: 321 EWGCSTWLVSSERLWRPDV--VLLNAAATTAGDYALRARVSNNGSVSCIKRLDISTPISM 494
++ + + +W PD ++ R+ NG+V+ + R +
Sbjct: 129 QYEFLNAIHHYDDIWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQG 188
Query: 495 QLDNWPNDMXTCTFKFGSRMHNXDEMDFV 581
+L+ +P D C+F S + + +V
Sbjct: 189 RLNIFPFDDPLCSFAIESISYEQTAITYV 217
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 31.5 bits (68), Expect = 0.010
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Frame = +3
Query: 354 ERLWRPDVVLLNAAATTAGDYALRAR---VSNNGSVSCIKRLDISTPISMQLDNWPNDMX 524
+ +WRPD NA + T + + + ++ + +L + +M +P+D
Sbjct: 116 KNMWRPDSFFKNAKSVTFQTMTIPNHYLWLYKDKTILYMVKLTLKLSCAMNFLIYPHDTQ 175
Query: 525 TCTFKFGSRMHNXDEMDFVIDKXI 596
C + S H DEM F D +
Sbjct: 176 ECKLQMESLSHTTDEMIFQWDPDV 199
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 29.9 bits (64), Expect = 0.031
Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 4/132 (3%)
Frame = +3
Query: 198 IVVNLT-LHLRHANIRESESTVRILADLQMNWIDERLXW-NAGEWGCSTWLVSSERLWRP 371
+ VN++ L L A+ ES + LQ W D RL + N ++ + + +W P
Sbjct: 137 LTVNVSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQYEFLNAIHHYDDIWLP 196
Query: 372 DV--VLLNAAATTAGDYALRARVSNNGSVSCIKRLDISTPISMQLDNWPNDMXTCTFKFG 545
D ++ R+ NG+V+ + R + +L+ +P D C+F
Sbjct: 197 DTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIE 256
Query: 546 SRMHNXDEMDFV 581
S + + +V
Sbjct: 257 SISYEQTAITYV 268
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 23.4 bits (48), Expect = 2.7
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Frame = +3
Query: 354 ERLWRPDVVLLNAAATTAGDYALRARVSN-----NGSVSCIKRLDISTPISMQLDNWPND 518
+ LW+PD LNA + AL + S+ N +V R+ M+ +P D
Sbjct: 69 DSLWQPDPYFLNAKVSEIA--ALNHKFSSVTLYRNKTVKYSARMHAIIACQMEFQLYPMD 126
Query: 519 MXTC 530
+ C
Sbjct: 127 IQIC 130
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,681
Number of Sequences: 438
Number of extensions: 4016
Number of successful extensions: 65
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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