Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_M05
(846 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL359706-1|CAI12865.1| 495|Homo sapiens nuclear fragile X menta... 34 0.56
AL354816-1|CAC40689.2| 495|Homo sapiens nuclear fragile X menta... 34 0.56
AF159548-1|AAF15315.1| 495|Homo sapiens nuclear FMRP interactin... 34 0.75
L21990-1|AAA60301.1| 464|Homo sapiens spiceosomal protein protein. 33 1.3
BC015804-1|AAH15804.1| 481|Homo sapiens SF3A2 protein protein. 33 1.3
BC009903-1|AAH09903.1| 464|Homo sapiens splicing factor 3a, sub... 33 1.3
BC004434-1|AAH04434.1| 464|Homo sapiens splicing factor 3a, sub... 33 1.3
AC005263-1|AAC25613.1| 464|Homo sapiens SP62_HUMAN protein. 33 1.3
U73825-1|AAB95090.1| 465|Homo sapiens Smad5 protein. 32 2.3
CR457424-1|CAG33705.1| 465|Homo sapiens MADH5 protein. 32 2.3
BC009682-1|AAH09682.1| 465|Homo sapiens SMAD family member 5 pr... 32 2.3
AK127507-1|BAC87013.1| 130|Homo sapiens protein ( Homo sapiens ... 32 2.3
AF017789-1|AAB80727.1| 1098|Homo sapiens putative transcription ... 32 2.3
AF010601-1|AAB66353.1| 465|Homo sapiens SMAD5 protein. 32 2.3
AF009744-1|AAB82655.1| 462|Homo sapiens Mad homolog protein. 32 2.3
AF009678-1|AAB72180.1| 465|Homo sapiens Smad5 protein. 32 2.3
X89894-1|CAA61984.1| 443|Homo sapiens nuclear receptor protein. 31 4.0
S81243-1|AAB36006.1| 684|Homo sapiens CHN protein. 31 4.0
D78579-1|BAA11419.1| 626|Homo sapiens neuron derived orphan rec... 31 4.0
BC057784-1|AAH57784.1| 519|Homo sapiens FLJ14803 protein protein. 31 4.0
BC045618-1|AAH45618.1| 561|Homo sapiens FLJ14803 protein protein. 31 4.0
AL359710-3|CAI95139.1| 443|Homo sapiens nuclear receptor subfam... 31 4.0
AL359710-2|CAI95138.1| 626|Homo sapiens nuclear receptor subfam... 31 4.0
AL359710-1|CAM16648.1| 637|Homo sapiens nuclear receptor subfam... 31 4.0
AL358937-4|CAI95320.1| 626|Homo sapiens nuclear receptor subfam... 31 4.0
AL358937-3|CAM22558.1| 637|Homo sapiens nuclear receptor subfam... 31 4.0
AK074732-1|BAC11168.1| 561|Homo sapiens protein ( Homo sapiens ... 31 4.0
AK027709-1|BAB55314.1| 561|Homo sapiens protein ( Homo sapiens ... 31 4.0
AK027678-1|BAB55289.1| 203|Homo sapiens protein ( Homo sapiens ... 31 4.0
AK054581-1|BAB70764.1| 262|Homo sapiens protein ( Homo sapiens ... 31 6.9
U94836-1|AAB53327.1| 884|Homo sapiens ERPROT 213-21 protein. 30 9.2
BC111727-1|AAI11728.1| 1077|Homo sapiens transcription elongatio... 30 9.2
BC021294-1|AAH21294.1| 884|Homo sapiens calcium homeostasis end... 30 9.2
AF536542-1|AAN77183.1| 916|Homo sapiens SR-related CTD associat... 30 9.2
AB209910-1|BAD93147.1| 1081|Homo sapiens transcription elongatio... 30 9.2
AB209730-1|BAD92967.1| 399|Homo sapiens calcium homeostasis end... 30 9.2
>AL359706-1|CAI12865.1| 495|Homo sapiens nuclear fragile X mental
retardation protein interacting protein 1 protein.
Length = 495
Score = 34.3 bits (75), Expect = 0.56
Identities = 21/67 (31%), Positives = 29/67 (43%)
Frame = +3
Query: 495 SHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYYKEFAPGLKP 674
S +W P PPL S L + P S QPP P P P+ + PG +P
Sbjct: 36 SWMFWAMLP--PPPPPLTSSLPAAGSK-PSSESQPPMEAQSLPGAP-PPFDAQILPGAQP 91
Query: 675 PLSSEAP 695
P +++P
Sbjct: 92 PFDAQSP 98
>AL354816-1|CAC40689.2| 495|Homo sapiens nuclear fragile X mental
retardation protein interacting protein 1 protein.
Length = 495
Score = 34.3 bits (75), Expect = 0.56
Identities = 21/67 (31%), Positives = 29/67 (43%)
Frame = +3
Query: 495 SHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYYKEFAPGLKP 674
S +W P PPL S L + P S QPP P P P+ + PG +P
Sbjct: 36 SWMFWAMLP--PPPPPLTSSLPAAGSK-PSSESQPPMEAQSLPGAP-PPFDAQILPGAQP 91
Query: 675 PLSSEAP 695
P +++P
Sbjct: 92 PFDAQSP 98
>AF159548-1|AAF15315.1| 495|Homo sapiens nuclear FMRP interacting
protein 1 protein.
Length = 495
Score = 33.9 bits (74), Expect = 0.75
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +3
Query: 537 PPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYYKEFAPGLKPPLSSEAP 695
PPL S L + P S QPP P P P+ + PG +PP +++P
Sbjct: 48 PPLTSSLPAAGSK-PSSESQPPMEAQSLPGAP-PPFDAQILPGAQPPFDAQSP 98
>L21990-1|AAA60301.1| 464|Homo sapiens spiceosomal protein protein.
Length = 464
Score = 33.1 bits (72), Expect = 1.3
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +3
Query: 537 PPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYYKEFAPGLKPPLSSEAPSAY-LTP 713
PPL + L P +P+S+ PP P P +P T PG P L AP + P
Sbjct: 235 PPLMNGL-PPRPPLPESLPPPPPGGLPLPPMPPTGPAPSGPPG-PPQLPPPAPGVHPPAP 292
Query: 714 LXHWGMAKGVSPP 752
+ H A GV PP
Sbjct: 293 VVH-PPASGVHPP 304
>BC015804-1|AAH15804.1| 481|Homo sapiens SF3A2 protein protein.
Length = 481
Score = 33.1 bits (72), Expect = 1.3
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +3
Query: 537 PPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYYKEFAPGLKPPLSSEAPSAY-LTP 713
PPL + L P +P+S+ PP P P +P T PG P L AP + P
Sbjct: 235 PPLMNGL-PPRPPLPESLPPPPPGGLPLPPMPPTGPAPSGPPG-PPQLPPPAPGVHPPAP 292
Query: 714 LXHWGMAKGVSPP 752
+ H A GV PP
Sbjct: 293 VVH-PPASGVHPP 304
>BC009903-1|AAH09903.1| 464|Homo sapiens splicing factor 3a,
subunit 2, 66kDa protein.
Length = 464
Score = 33.1 bits (72), Expect = 1.3
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +3
Query: 537 PPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYYKEFAPGLKPPLSSEAPSAY-LTP 713
PPL + L P +P+S+ PP P P +P T PG P L AP + P
Sbjct: 235 PPLMNGL-PPRPPLPESLPPPPPGGLPLPPMPPTGPAPSGPPG-PPQLPPPAPGVHPPAP 292
Query: 714 LXHWGMAKGVSPP 752
+ H A GV PP
Sbjct: 293 VVH-PPASGVHPP 304
>BC004434-1|AAH04434.1| 464|Homo sapiens splicing factor 3a,
subunit 2, 66kDa protein.
Length = 464
Score = 33.1 bits (72), Expect = 1.3
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +3
Query: 537 PPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYYKEFAPGLKPPLSSEAPSAY-LTP 713
PPL + L P +P+S+ PP P P +P T PG P L AP + P
Sbjct: 235 PPLMNGL-PPRPPLPESLPPPPPGGLPLPPMPPTGPAPSGPPG-PPQLPPPAPGVHPPAP 292
Query: 714 LXHWGMAKGVSPP 752
+ H A GV PP
Sbjct: 293 VVH-PPASGVHPP 304
>AC005263-1|AAC25613.1| 464|Homo sapiens SP62_HUMAN protein.
Length = 464
Score = 33.1 bits (72), Expect = 1.3
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +3
Query: 537 PPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYYKEFAPGLKPPLSSEAPSAY-LTP 713
PPL + L P +P+S+ PP P P +P T PG P L AP + P
Sbjct: 235 PPLMNGL-PPRPPLPESLPPPPPGGLPLPPMPPTGPAPSGPPG-PPQLPPPAPGVHPPAP 292
Query: 714 LXHWGMAKGVSPP 752
+ H A GV PP
Sbjct: 293 VVH-PPASGVHPP 304
>U73825-1|AAB95090.1| 465|Homo sapiens Smad5 protein.
Length = 465
Score = 32.3 bits (70), Expect = 2.3
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +3
Query: 558 HQPDHQ-IPDSIHQPPQT*HPFPSIP*TPYYKEFAPGLKP--PLSSEAPSAYLTP 713
H P + PDS HQP T PFP P +PY A P P SS S + P
Sbjct: 166 HMPQNATFPDSFHQPNNT--PFPLSPNSPYPPSPASSTYPNSPASSGPGSPFQLP 218
>CR457424-1|CAG33705.1| 465|Homo sapiens MADH5 protein.
Length = 465
Score = 32.3 bits (70), Expect = 2.3
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +3
Query: 558 HQPDHQ-IPDSIHQPPQT*HPFPSIP*TPYYKEFAPGLKP--PLSSEAPSAYLTP 713
H P + PDS HQP T PFP P +PY A P P SS S + P
Sbjct: 166 HMPQNATFPDSFHQPNNT--PFPLSPNSPYPPSPASSAYPNSPASSGPGSPFQLP 218
>BC009682-1|AAH09682.1| 465|Homo sapiens SMAD family member 5
protein.
Length = 465
Score = 32.3 bits (70), Expect = 2.3
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +3
Query: 558 HQPDHQ-IPDSIHQPPQT*HPFPSIP*TPYYKEFAPGLKP--PLSSEAPSAYLTP 713
H P + PDS HQP T PFP P +PY A P P SS S + P
Sbjct: 166 HMPQNATFPDSFHQPNNT--PFPLSPNSPYPPSPASSTYPNSPASSGPGSPFQLP 218
>AK127507-1|BAC87013.1| 130|Homo sapiens protein ( Homo sapiens
cDNA FLJ45600 fis, clone BRTHA3020369. ).
Length = 130
Score = 32.3 bits (70), Expect = 2.3
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +3
Query: 465 SQCAGHPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPPQ 605
S C G PF S+ S P++S HP + +H Q P + QPPQ
Sbjct: 85 SNCIG-PFS-SYLTSVSLPHSSIHPSIHPSIHPSFIQTPSGLSQPPQ 129
>AF017789-1|AAB80727.1| 1098|Homo sapiens putative transcription
factor CA150 protein.
Length = 1098
Score = 32.3 bits (70), Expect = 2.3
Identities = 23/62 (37%), Positives = 30/62 (48%)
Frame = +2
Query: 536 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLNAVLQGVRAGVKASVVIRGSISVSHPP 715
P+PA+S TST SS P T TT TS++ Q SV ++SVS P
Sbjct: 266 PAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSSAVSVA-TPTVSVSTPA 323
Query: 716 RS 721
R+
Sbjct: 324 RT 325
>AF010601-1|AAB66353.1| 465|Homo sapiens SMAD5 protein.
Length = 465
Score = 32.3 bits (70), Expect = 2.3
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +3
Query: 558 HQPDHQ-IPDSIHQPPQT*HPFPSIP*TPYYKEFAPGLKP--PLSSEAPSAYLTP 713
H P + PDS HQP T PFP P +PY A P P SS S + P
Sbjct: 166 HMPQNATFPDSFHQPNNT--PFPLSPNSPYPPSPASSTYPNSPASSGPGSPFQLP 218
>AF009744-1|AAB82655.1| 462|Homo sapiens Mad homolog protein.
Length = 462
Score = 32.3 bits (70), Expect = 2.3
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +3
Query: 558 HQPDHQ-IPDSIHQPPQT*HPFPSIP*TPYYKEFAPGLKP--PLSSEAPSAYLTP 713
H P + PDS HQP T PFP P +PY A P P SS S + P
Sbjct: 163 HMPQNATFPDSFHQPNNT--PFPLSPNSPYPPSPASSTYPNSPASSGPGSPFQLP 215
>AF009678-1|AAB72180.1| 465|Homo sapiens Smad5 protein.
Length = 465
Score = 32.3 bits (70), Expect = 2.3
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +3
Query: 558 HQPDHQ-IPDSIHQPPQT*HPFPSIP*TPYYKEFAPGLKP--PLSSEAPSAYLTP 713
H P + PDS HQP T PFP P +PY A P P SS S + P
Sbjct: 166 HMPQNATFPDSFHQPNNT--PFPLSPNSPYPPSPASSTYPNSPASSGPGSPFQLP 218
>X89894-1|CAA61984.1| 443|Homo sapiens nuclear receptor protein.
Length = 443
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>S81243-1|AAB36006.1| 684|Homo sapiens CHN protein.
Length = 684
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 93 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 144
>D78579-1|BAA11419.1| 626|Homo sapiens neuron derived orphan
receptor protein.
Length = 626
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>BC057784-1|AAH57784.1| 519|Homo sapiens FLJ14803 protein protein.
Length = 519
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 533 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLNAVLQGVRAGVKAS 676
PPSP+I S S +P T+P T+ + + LQG+ +G S
Sbjct: 129 PPSPSIQGQSVLSYSPSRSPSTSPKFTTSCMTGYSPQLQGLSSGGSGS 176
>BC045618-1|AAH45618.1| 561|Homo sapiens FLJ14803 protein protein.
Length = 561
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 533 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLNAVLQGVRAGVKAS 676
PPSP+I S S +P T+P T+ + + LQG+ +G S
Sbjct: 129 PPSPSIQGQSVLSYSPSRSPSTSPKFTTSCMTGYSPQLQGLSSGGSGS 176
>AL359710-3|CAI95139.1| 443|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 443
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-2|CAI95138.1| 626|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 626
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-1|CAM16648.1| 637|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 637
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 46 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97
>AL358937-4|CAI95320.1| 626|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 626
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL358937-3|CAM22558.1| 637|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 637
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 46 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97
>AK074732-1|BAC11168.1| 561|Homo sapiens protein ( Homo sapiens
cDNA FLJ90251 fis, clone NT2RM4000115. ).
Length = 561
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 533 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLNAVLQGVRAGVKAS 676
PPSP+I S S +P T+P T+ + + LQG+ +G S
Sbjct: 129 PPSPSIQGQSVLSYSPSRSPSTSPKFTTSCMTGYSPQLQGLSSGGSGS 176
>AK027709-1|BAB55314.1| 561|Homo sapiens protein ( Homo sapiens
cDNA FLJ14803 fis, clone NT2RP4001442. ).
Length = 561
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 533 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLNAVLQGVRAGVKAS 676
PPSP+I S S +P T+P T+ + + LQG+ +G S
Sbjct: 129 PPSPSIQGQSVLSYSPSRSPSTSPKFTTSCMTGYSPQLQGLSSGGSGS 176
>AK027678-1|BAB55289.1| 203|Homo sapiens protein ( Homo sapiens
cDNA FLJ14772 fis, clone NT2RP3004332. ).
Length = 203
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 533 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLNAVLQGVRAGVKAS 676
PPSP+I S S +P T+P T+ + + LQG+ +G S
Sbjct: 129 PPSPSIQGQSVLSYSPSRSPSTSPKFTTSCMTGYSPQLQGLSSGGSGS 176
>AK054581-1|BAB70764.1| 262|Homo sapiens protein ( Homo sapiens
cDNA FLJ30019 fis, clone 3NB692000545. ).
Length = 262
Score = 30.7 bits (66), Expect = 6.9
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 594 QPPQT*HPFPSIP*TPYYKEFAPGLKPPLSSEAPSAYLTP 713
+PP + PFP +P +P FAP L+PP +AP + P
Sbjct: 85 RPPSS--PFPPVPGSP----FAPSLRPPAWMDAPRLPVRP 118
>U94836-1|AAB53327.1| 884|Homo sapiens ERPROT 213-21 protein.
Length = 884
Score = 30.3 bits (65), Expect = 9.2
Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Frame = +3
Query: 480 HPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPS-IP*TPYYKEF 656
HP I H W + PP QP H PP H PS +P PY+ +
Sbjct: 563 HPGINEHPPWAGPQHPDFGPPPHGFNGQPPHMRRQG---PPHINHDDPSLVPNVPYF-DL 618
Query: 657 APGLKPPL 680
GL PL
Sbjct: 619 PAGLMAPL 626
>BC111727-1|AAI11728.1| 1077|Homo sapiens transcription elongation
regulator 1 protein.
Length = 1077
Score = 30.3 bits (65), Expect = 9.2
Identities = 22/59 (37%), Positives = 28/59 (47%)
Frame = +2
Query: 536 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLNAVLQGVRAGVKASVVIRGSISVSHP 712
P+PA+S TST SS P T TT TS++ Q SV ++SVS P
Sbjct: 266 PAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSSAVSVA-TPTVSVSTP 322
>BC021294-1|AAH21294.1| 884|Homo sapiens calcium homeostasis
endoplasmic reticulum protein protein.
Length = 884
Score = 30.3 bits (65), Expect = 9.2
Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Frame = +3
Query: 480 HPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPS-IP*TPYYKEF 656
HP I H W + PP QP H PP H PS +P PY+ +
Sbjct: 563 HPGINEHPPWAGPQHPDFGPPPHGFNGQPPHMRRQG---PPHINHDDPSLVPNVPYF-DL 618
Query: 657 APGLKPPL 680
GL PL
Sbjct: 619 PAGLMAPL 626
>AF536542-1|AAN77183.1| 916|Homo sapiens SR-related CTD associated
factor 6 protein.
Length = 916
Score = 30.3 bits (65), Expect = 9.2
Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Frame = +3
Query: 480 HPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPS-IP*TPYYKEF 656
HP I H W + PP QP H PP H PS +P PY+ +
Sbjct: 595 HPGINEHPPWAGPQHPDFGPPPHGFNGQPPHMRRQG---PPHINHDDPSLVPNVPYF-DL 650
Query: 657 APGLKPPL 680
GL PL
Sbjct: 651 PAGLMAPL 658
>AB209910-1|BAD93147.1| 1081|Homo sapiens transcription elongation
regulator 1 variant protein.
Length = 1081
Score = 30.3 bits (65), Expect = 9.2
Identities = 22/59 (37%), Positives = 28/59 (47%)
Frame = +2
Query: 536 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLNAVLQGVRAGVKASVVIRGSISVSHP 712
P+PA+S TST SS P T TT TS++ Q SV ++SVS P
Sbjct: 270 PAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSSAVSVA-TPTVSVSTP 326
>AB209730-1|BAD92967.1| 399|Homo sapiens calcium homeostasis
endoplasmic reticulum protein variant protein.
Length = 399
Score = 30.3 bits (65), Expect = 9.2
Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Frame = +3
Query: 480 HPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPS-IP*TPYYKEF 656
HP I H W + PP QP H PP H PS +P PY+ +
Sbjct: 78 HPGINEHPPWAGPQHPDFGPPPHGFNGQPPHMRRQG---PPHINHDDPSLVPNVPYF-DL 133
Query: 657 APGLKPPL 680
GL PL
Sbjct: 134 PAGLMAPL 141
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,537,268
Number of Sequences: 237096
Number of extensions: 2735804
Number of successful extensions: 10360
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 9667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10347
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10705443456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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