Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_M03
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   166   3e-42
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   161   8e-41
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    40   3e-04
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    29   1.1  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    28   1.4  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.4  
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    27   3.2  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.7  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    25   9.9  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  166 bits (404), Expect = 3e-42
 Identities = 76/121 (62%), Positives = 94/121 (77%)
 Frame = +1

Query: 91  VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 270
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TWEKLVLAAR + 
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 271 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRSLDCIG 450
            IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPR +    
Sbjct: 70  TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129

Query: 451 P 453
           P
Sbjct: 130 P 130



 Score =  129 bits (311), Expect = 5e-31
 Identities = 61/96 (63%), Positives = 73/96 (76%)
 Frame = +2

Query: 434 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 613
           L+IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLAR
Sbjct: 124 LIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAR 183

Query: 614 EVLRLRGVLPRDQRWDVVVDLFFYRDPEXSEKDEQQ 721
           EVLRLRG + R   W+V+ DL+FYRDPE  E++E+Q
Sbjct: 184 EVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  161 bits (392), Expect = 8e-41
 Identities = 72/125 (57%), Positives = 95/125 (76%)
 Frame = +1

Query: 79  GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 258
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 259 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRSL 438
           R +  IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPR +
Sbjct: 65  RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124

Query: 439 DCIGP 453
               P
Sbjct: 125 VVTDP 129



 Score =  134 bits (324), Expect = 1e-32
 Identities = 69/130 (53%), Positives = 84/130 (64%), Gaps = 1/130 (0%)
 Frame = +2

Query: 434 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 613
           L++V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLAR
Sbjct: 123 LIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAR 182

Query: 614 EVLRLRGVLPRDQRWDVVVDLFFYRDPEXSEKDEQQAKEQAVVPXKPXV-XAPVHERLE* 790
           EVLR+RG L R   WDV+ DL+FYRDPE  E++E+  K  A    +  V  A      E 
Sbjct: 183 EVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKKAAAAAAEEAQVEEAVAAAEFEI 242

Query: 791 NTGASGFMGP 820
              A+G + P
Sbjct: 243 TDSAAGSVDP 252


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 23/74 (31%), Positives = 37/74 (50%)
 Frame = +2

Query: 392 LLLTRSKLHSVNLALLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTK 571
           L+ T  K   V   L+++L+P ++     EA   ++P I + +TD+  R V   IP N  
Sbjct: 168 LIQTDKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDD 227

Query: 572 SSHSIGLMWWLLAR 613
           S     L+  LL+R
Sbjct: 228 SLRCTDLIAGLLSR 241


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +1

Query: 214 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 390
           V+++R TW +LV+  +  + + N  ++ +I++    +  V+ FA H           PG
Sbjct: 89  VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -3

Query: 678 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 580
           N+S+T +++ SR    ST RS STS AN H  K  E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 476 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 586
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 641 PRDQRWDVVVDLFFYRDPEXSEKDEQQAKEQAVVPXKPXVXAPVHERL-E*NTGASGFMG 817
           PR QR D+  +   Y +    E D  + ++    P        +++ L E +T  SGFMG
Sbjct: 471 PRSQREDLHAEPLTYFNQSNVEVDNVELRKNTQ-PSSDAANRDLYQVLPEKSTNISGFMG 529

Query: 818 PE 823
           P+
Sbjct: 530 PQ 531


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 584 IGLMWWLLAREVLRLRGVLPRDQRWD 661
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 6/25 (24%), Positives = 17/25 (68%)
 Frame = -2

Query: 298 RTHQRGSRWLRQHEQPEQVFPRYDA 224
           R H++ + W ++HE+P+ +   +++
Sbjct: 571 RFHKKYTTWFQRHEEPKMITDEFES 595


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,588,110
Number of Sequences: 5004
Number of extensions: 76847
Number of successful extensions: 178
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)