Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_M03
(827 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 167 1e-41
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 163 1e-40
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 29 4.5
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 6.0
06_03_0543 + 21967787-21970261 29 6.0
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 7.9
06_01_0212 - 1611855-1611941,1613447-1613521,1613603-1613665,161... 28 7.9
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 7.9
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 28 7.9
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 167 bits (405), Expect = 1e-41
Identities = 80/133 (60%), Positives = 97/133 (72%)
Frame = +1
Query: 61 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 240
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 241 KLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 420
KL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 421 REPRSLDCIGPCT 459
EPR L P T
Sbjct: 121 SEPRLLILTDPRT 133
Score = 131 bits (316), Expect = 8e-31
Identities = 57/100 (57%), Positives = 76/100 (76%)
Frame = +2
Query: 434 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 613
LLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++WLLAR
Sbjct: 125 LLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLAR 184
Query: 614 EVLRLRGVLPRDQRWDVVVDLFFYRDPEXSEKDEQQAKEQ 733
VL++RG + +WDV+VDLFFYRDPE +++ E++A Q
Sbjct: 185 MVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 163 bits (397), Expect = 1e-40
Identities = 77/122 (63%), Positives = 92/122 (75%)
Frame = +1
Query: 94 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 273
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 274 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRSLDCIGP 453
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPR L P
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
Query: 454 CT 459
T
Sbjct: 132 RT 133
Score = 130 bits (313), Expect = 2e-30
Identities = 60/103 (58%), Positives = 76/103 (73%)
Frame = +2
Query: 434 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 613
LLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR
Sbjct: 125 LLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLAR 184
Query: 614 EVLRLRGVLPRDQRWDVVVDLFFYRDPEXSEKDEQQAKEQAVV 742
VL++RG + +WDV+VDLFFYRDPE E EQ+ +E A+V
Sbjct: 185 MVLQMRGTILPGHKWDVMVDLFFYRDPE--EAKEQEEEEAALV 225
>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 401 TRSKLHSVNLALLIVLDPAQDHQPITEASYVNIPVI--ALCNTDSPLRFVDIAIPCNTK 571
T L VN AL ++ P T A+Y+N+ ++ L N LR++ A+ CN +
Sbjct: 981 TELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNKR 1039
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 161 TFSAPRWVVAASILVTSSSLRASTSNP 81
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 590 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 679
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -2
Query: 343 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 188
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
>06_01_0212 -
1611855-1611941,1613447-1613521,1613603-1613665,
1613745-1613810,1614133-1614202,1614513-1614683,
1615504-1615604,1616140-1616187,1616575-1616683,
1617092-1617248,1617372-1617521,1618262-1618380,
1618841-1619061
Length = 478
Score = 28.3 bits (60), Expect = 7.9
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = +2
Query: 287 LMCSSSHHGPSVSVLY*SLPRTPVLRL-LRDVSHQVLLLTRSKLHSVNLALLIVLDPA-- 457
+M SSS H +V L ++PR P L LR + L++ + + NL L V+ P+
Sbjct: 270 VMTSSSDHAIAVPKLKITIPREPELATKLRAERLKRLIIYTLSMPTKNLVLWQVVQPSGR 329
Query: 458 QDHQ 469
DHQ
Sbjct: 330 NDHQ 333
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 168 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 275
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 28.3 bits (60), Expect = 7.9
Identities = 22/78 (28%), Positives = 27/78 (34%)
Frame = +3
Query: 114 CHQNACCNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 293
CH C P GR+ P G + CD A+ G TC C H+ P C
Sbjct: 324 CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKCPERC 378
Query: 294 VRHLITALRSACCTEVCR 347
R T+ CR
Sbjct: 379 HRGSCVETCRLVITKSCR 396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,010,985
Number of Sequences: 37544
Number of extensions: 569271
Number of successful extensions: 1459
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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