Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_M02
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po...    27   2.6  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   6.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   7.9  

>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 449

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -1

Query: 141 ITRHTGIPVTIPAQESGFSAHLSFYRLIPRRNENPLLCLSKK 16
           + R   + V IP++E  ++A L +   +P+R  N L   S +
Sbjct: 52  VKRRMLVSVEIPSKEKSYNAFLHWMSTVPKRYSNQLAVESNR 93


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 20/41 (48%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -1

Query: 861 GGGXXXRAGXXAXGGGXRGGPRXVXXG-GGTLGXAG*XSGG 742
           GG    R G  A GGG RGG R    G GG  G  G  SGG
Sbjct: 26  GGFGGGRGG--ARGGG-RGGARGGRGGRGGARGGRGGSSGG 63


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 803 PPRXPPPXAXXPARXXXPPP 862
           PP  PPP    P++   PPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,393,542
Number of Sequences: 5004
Number of extensions: 36833
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)