Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_M02
(864 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC003413-1|AAH03413.1| 217|Homo sapiens nucleolar protein famil... 32 3.1
AJ276003-1|CAB76563.1| 217|Homo sapiens GAR1 protein protein. 32 3.1
X64624-1|CAA45907.1| 331|Homo sapiens RDC-1 protein. 31 4.1
X56597-1|CAA39935.1| 321|Homo sapiens fibrillarin protein. 31 5.4
M59849-1|AAA52453.1| 321|Homo sapiens fibrillarin protein. 31 5.4
M59465-1|AAA51550.1| 790|Homo sapiens A20 protein. 31 5.4
CR457069-1|CAG33350.1| 321|Homo sapiens FBL protein. 31 5.4
BT020144-1|AAV38946.1| 321|Homo sapiens fibrillarin protein. 31 5.4
BT006830-1|AAP35476.1| 321|Homo sapiens fibrillarin protein. 31 5.4
BC114480-1|AAI14481.1| 790|Homo sapiens tumor necrosis factor, ... 31 5.4
BC113871-1|AAI13872.1| 790|Homo sapiens tumor necrosis factor, ... 31 5.4
BC019260-1|AAH19260.1| 321|Homo sapiens fibrillarin protein. 31 5.4
AY248754-1|AAO61093.1| 790|Homo sapiens tumor necrosis factor, ... 31 5.4
AL357060-4|CAH72937.1| 790|Homo sapiens tumor necrosis factor, ... 31 5.4
AL157444-1|CAB75664.1| 636|Homo sapiens hypothetical protein pr... 31 5.4
AC006950-1|AAD15623.1| 227|Homo sapiens FBRL_HUMAN [AA 1- 227] ... 31 5.4
AC005393-3|AAC28913.1| 318|Homo sapiens FBRL_HUMAN protein. 31 5.4
U10063-1|AAA57161.1| 423|Homo sapiens POU domain factor protein. 30 9.5
>BC003413-1|AAH03413.1| 217|Homo sapiens nucleolar protein family
A, member 1 (H/ACA small nucleolar RNPs) protein.
Length = 217
Score = 31.9 bits (69), Expect = 3.1
Identities = 19/44 (43%), Positives = 19/44 (43%)
Frame = -1
Query: 861 GGGXXXRAGXXAXGGGXRGGPRXVXXGGGTLGXAG*XSGGXNXG 730
GGG R G GGG RGG R GG G G GG G
Sbjct: 170 GGGRGGRGG--GRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGG 211
>AJ276003-1|CAB76563.1| 217|Homo sapiens GAR1 protein protein.
Length = 217
Score = 31.9 bits (69), Expect = 3.1
Identities = 19/44 (43%), Positives = 19/44 (43%)
Frame = -1
Query: 861 GGGXXXRAGXXAXGGGXRGGPRXVXXGGGTLGXAG*XSGGXNXG 730
GGG R G GGG RGG R GG G G GG G
Sbjct: 170 GGGRGGRGG--GRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGG 211
>X64624-1|CAA45907.1| 331|Homo sapiens RDC-1 protein.
Length = 331
Score = 31.5 bits (68), Expect = 4.1
Identities = 19/44 (43%), Positives = 19/44 (43%)
Frame = -1
Query: 861 GGGXXXRAGXXAXGGGXRGGPRXVXXGGGTLGXAG*XSGGXNXG 730
GGG AG GG GGP GGG G AG GG G
Sbjct: 54 GGGAHDAAGGGGPRGGG-GGPGGGGPGGGGGGAAGGGGGGPGGG 96
>X56597-1|CAA39935.1| 321|Homo sapiens fibrillarin protein.
Length = 321
Score = 31.1 bits (67), Expect = 5.4
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = -1
Query: 858 GGXXXRAGXXAXGGGXRGGPRXVXXGGGTLGXAG*XSGGXNXG 730
GG G GGG RG R GGG G G GG + G
Sbjct: 25 GGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSG 67
>M59849-1|AAA52453.1| 321|Homo sapiens fibrillarin protein.
Length = 321
Score = 31.1 bits (67), Expect = 5.4
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = -1
Query: 858 GGXXXRAGXXAXGGGXRGGPRXVXXGGGTLGXAG*XSGGXNXG 730
GG G GGG RG R GGG G G GG + G
Sbjct: 25 GGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSG 67
>M59465-1|AAA51550.1| 790|Homo sapiens A20 protein.
Length = 790
Score = 31.1 bits (67), Expect = 5.4
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -2
Query: 521 ASGSARAAMPPASSVXCMSAXRXMIRSPMPMSHSLSSYSKLAGCAWGAGRVP 366
AS S ++PP+ S ++RSP P S + AGC A R P
Sbjct: 547 ASSSLSTSLPPSCHQRSKSDPSRLVRSPSPHSCHRAGNDAPAGCLSQAARTP 598
>CR457069-1|CAG33350.1| 321|Homo sapiens FBL protein.
Length = 321
Score = 31.1 bits (67), Expect = 5.4
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = -1
Query: 858 GGXXXRAGXXAXGGGXRGGPRXVXXGGGTLGXAG*XSGGXNXG 730
GG G GGG RG R GGG G G GG + G
Sbjct: 25 GGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSG 67
>BT020144-1|AAV38946.1| 321|Homo sapiens fibrillarin protein.
Length = 321
Score = 31.1 bits (67), Expect = 5.4
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = -1
Query: 858 GGXXXRAGXXAXGGGXRGGPRXVXXGGGTLGXAG*XSGGXNXG 730
GG G GGG RG R GGG G G GG + G
Sbjct: 25 GGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSG 67
>BT006830-1|AAP35476.1| 321|Homo sapiens fibrillarin protein.
Length = 321
Score = 31.1 bits (67), Expect = 5.4
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = -1
Query: 858 GGXXXRAGXXAXGGGXRGGPRXVXXGGGTLGXAG*XSGGXNXG 730
GG G GGG RG R GGG G G GG + G
Sbjct: 25 GGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSG 67
>BC114480-1|AAI14481.1| 790|Homo sapiens tumor necrosis factor,
alpha-induced protein 3 protein.
Length = 790
Score = 31.1 bits (67), Expect = 5.4
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -2
Query: 521 ASGSARAAMPPASSVXCMSAXRXMIRSPMPMSHSLSSYSKLAGCAWGAGRVP 366
AS S ++PP+ S ++RSP P S + AGC A R P
Sbjct: 547 ASSSLSTSLPPSCHQRSKSDPSRLVRSPSPHSCHRAGNDAPAGCLSQAARTP 598
>BC113871-1|AAI13872.1| 790|Homo sapiens tumor necrosis factor,
alpha-induced protein 3 protein.
Length = 790
Score = 31.1 bits (67), Expect = 5.4
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -2
Query: 521 ASGSARAAMPPASSVXCMSAXRXMIRSPMPMSHSLSSYSKLAGCAWGAGRVP 366
AS S ++PP+ S ++RSP P S + AGC A R P
Sbjct: 547 ASSSLSTSLPPSCHQRSKSDPSRLVRSPSPHSCHRAGNDAPAGCLSQAARTP 598
>BC019260-1|AAH19260.1| 321|Homo sapiens fibrillarin protein.
Length = 321
Score = 31.1 bits (67), Expect = 5.4
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = -1
Query: 858 GGXXXRAGXXAXGGGXRGGPRXVXXGGGTLGXAG*XSGGXNXG 730
GG G GGG RG R GGG G G GG + G
Sbjct: 25 GGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSG 67
>AY248754-1|AAO61093.1| 790|Homo sapiens tumor necrosis factor,
alpha-induced protein 3 protein.
Length = 790
Score = 31.1 bits (67), Expect = 5.4
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -2
Query: 521 ASGSARAAMPPASSVXCMSAXRXMIRSPMPMSHSLSSYSKLAGCAWGAGRVP 366
AS S ++PP+ S ++RSP P S + AGC A R P
Sbjct: 547 ASSSLSTSLPPSCHQRSKSDPSRLVRSPSPHSCHRAGNDAPAGCLSQAARTP 598
>AL357060-4|CAH72937.1| 790|Homo sapiens tumor necrosis factor,
alpha-induced protein 3 protein.
Length = 790
Score = 31.1 bits (67), Expect = 5.4
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -2
Query: 521 ASGSARAAMPPASSVXCMSAXRXMIRSPMPMSHSLSSYSKLAGCAWGAGRVP 366
AS S ++PP+ S ++RSP P S + AGC A R P
Sbjct: 547 ASSSLSTSLPPSCHQRSKSDPSRLVRSPSPHSCHRAGNDAPAGCLSQAARTP 598
>AL157444-1|CAB75664.1| 636|Homo sapiens hypothetical protein
protein.
Length = 636
Score = 31.1 bits (67), Expect = 5.4
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -2
Query: 521 ASGSARAAMPPASSVXCMSAXRXMIRSPMPMSHSLSSYSKLAGCAWGAGRVP 366
AS S ++PP+ S ++RSP P S + AGC A R P
Sbjct: 393 ASSSLSTSLPPSCHQRSKSDPSRLVRSPSPHSCHRAGNDAPAGCLSQAARTP 444
>AC006950-1|AAD15623.1| 227|Homo sapiens FBRL_HUMAN [AA 1- 227]
protein.
Length = 227
Score = 31.1 bits (67), Expect = 5.4
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = -1
Query: 858 GGXXXRAGXXAXGGGXRGGPRXVXXGGGTLGXAG*XSGGXNXG 730
GG G GGG RG R GGG G G GG + G
Sbjct: 25 GGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSG 67
>AC005393-3|AAC28913.1| 318|Homo sapiens FBRL_HUMAN protein.
Length = 318
Score = 31.1 bits (67), Expect = 5.4
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = -1
Query: 858 GGXXXRAGXXAXGGGXRGGPRXVXXGGGTLGXAG*XSGGXNXG 730
GG G GGG RG R GGG G G GG + G
Sbjct: 22 GGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSG 64
>U10063-1|AAA57161.1| 423|Homo sapiens POU domain factor protein.
Length = 423
Score = 30.3 bits (65), Expect = 9.5
Identities = 18/44 (40%), Positives = 18/44 (40%)
Frame = -1
Query: 861 GGGXXXRAGXXAXGGGXRGGPRXVXXGGGTLGXAG*XSGGXNXG 730
G G AG A GGG GP GGG G G GG G
Sbjct: 130 GAGGAGGAGAAAGGGGAHDGP---GGGGGPGGGGGPGGGGPGGG 170
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,993,462
Number of Sequences: 237096
Number of extensions: 1881862
Number of successful extensions: 14311
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 10801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13329
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11039988564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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