Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_M01
(860 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1324 + 32659752-32661972,32662067-32662761 34 0.17
05_03_0035 - 7592177-7592938 32 0.51
05_03_0033 - 7585267-7586028 32 0.51
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 31 1.2
01_06_0849 + 32433429-32433743,32433840-32434021,32434235-324343... 31 1.2
04_03_0446 - 16012926-16013042,16013266-16013469 30 2.7
09_06_0317 - 22265786-22267618,22267874-22268446,22268546-222686... 29 3.6
02_04_0629 + 24597370-24597789 29 3.6
12_02_1052 - 25698263-25698394,25698587-25698679,25698945-256989... 29 6.3
09_03_0099 + 12353777-12353877,12354022-12354220,12354720-123548... 29 6.3
01_06_0238 - 27774546-27775418 28 8.3
>04_04_1324 + 32659752-32661972,32662067-32662761
Length = 971
Score = 33.9 bits (74), Expect = 0.17
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = +1
Query: 220 EHLDRETKQDPADSPVH--HHRVATQSFLEM-ERGPAAEHRPPSVAEKLMDHMADKFTDS 390
EH + AD+ VH HR + S E P+ EHR SV+ A TDS
Sbjct: 396 EHRQLSMSLNDADTEVHGGEHRRLSMSLNEAGTEQPSGEHRQLSVSSS----DAGSSTDS 451
Query: 391 ESDADTAGESP 423
SD+DT G P
Sbjct: 452 TSDSDTPGGDP 462
>05_03_0035 - 7592177-7592938
Length = 253
Score = 32.3 bits (70), Expect = 0.51
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = +1
Query: 235 ETKQDPADSPVHHHRVATQSFLEMERGPAAEHRPPSVAEKLMDHMADKFTDSESDADTAG 414
E +P P + S+ + + GP E +P A + T SES ++
Sbjct: 52 EKSSEPEAKPASQQEPKSDSYSQAKPGPKDEPKPEPEAMSASQPESKPATYSESKPESKA 111
Query: 415 ESPLHRPEPRVE 450
E P +PEP+ E
Sbjct: 112 E-PESKPEPKAE 122
>05_03_0033 - 7585267-7586028
Length = 253
Score = 32.3 bits (70), Expect = 0.51
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = +1
Query: 235 ETKQDPADSPVHHHRVATQSFLEMERGPAAEHRPPSVAEKLMDHMADKFTDSESDADTAG 414
E +P P + S+ + + GP E +P A + T SES ++
Sbjct: 52 EKSSEPEAKPASQQEPKSDSYSQAKPGPKDEPKPEPEAMSASQPESKPATYSESKPESKA 111
Query: 415 ESPLHRPEPRVE 450
E P +PEP+ E
Sbjct: 112 E-PESKPEPKAE 122
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 532 RARGPAPVSGRELQASVVPVSER*ASGVRPSARADGGATLLQY 404
R+R P P+ R AS+ P E A PSA ++G L+ Y
Sbjct: 754 RSRSPPPIHNRSPLASLSPKRESNAKSRSPSASSEGKKGLVSY 796
>01_06_0849 +
32433429-32433743,32433840-32434021,32434235-32434310,
32434413-32434570,32435567-32435738,32435817-32435927,
32436197-32436280
Length = 365
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/65 (32%), Positives = 27/65 (41%)
Frame = +3
Query: 522 PRARSACXRETCGAQSGARPSSLSLSRCRKRNPSXEKXWLRPSPEPTLATKAGPR*XXNP 701
P R AC C + RP S+S++RCR P+P P AGP +P
Sbjct: 13 PPIRPACGNPVCRS----RPGSVSVARCRAEAAP-------PAPAPAARRAAGPYTGRDP 61
Query: 702 EPDSP 716
E P
Sbjct: 62 EVKKP 66
>04_03_0446 - 16012926-16013042,16013266-16013469
Length = 106
Score = 29.9 bits (64), Expect = 2.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 296 SWRWNVGPQRNIGRLPSPKSLW 361
SWRW GR PSP+ +W
Sbjct: 46 SWRWRQAEGSPAGRSPSPRQIW 67
>09_06_0317 -
22265786-22267618,22267874-22268446,22268546-22268677,
22268931-22269137,22269287-22269388,22270742-22271032
Length = 1045
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -3
Query: 381 KFVGHVVHKLFGDGRRPMFRCGPTFHLQETLSGH 280
K+ HV+ LF D CG F L+E LS H
Sbjct: 879 KYHAHVISTLFDDQSHQCNTCGLRFSLEEELSVH 912
>02_04_0629 + 24597370-24597789
Length = 139
Score = 29.5 bits (63), Expect = 3.6
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +3
Query: 432 ARAEGRTPEA*RSDTGTTDA*SSRPDTGAGPRARSACXRE-TCGAQSGARPSSLSLSRCR 608
ARA GR P A R D G+ RP G G +AR R CG + GA ++ +
Sbjct: 29 ARA-GREPGAGRRDDGSRTVACGRP-PGDGRKARRDGERTCPCGRRRGAAATAGRVHLAG 86
Query: 609 KRNPSXEKXW 638
+ P+ + W
Sbjct: 87 PQEPASREEW 96
>12_02_1052 -
25698263-25698394,25698587-25698679,25698945-25698995,
25699074-25699258,25699361-25699407,25699704-25699918
Length = 240
Score = 28.7 bits (61), Expect = 6.3
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +3
Query: 501 RPDTGAGPRARSACXRETCGAQSGARPSSLSLSRCRKRNPSXEKXWL-RPS---PEPTLA 668
R G+G A + C T + RP S S R+R PS W RPS P+++
Sbjct: 29 RDMAGSGWAADACCTAATSSTRRSRRPMRASASSRRRRTPS--STWTPRPSRYGGTPSIS 86
Query: 669 TKAG-PR 686
T G PR
Sbjct: 87 TSRGQPR 93
>09_03_0099 +
12353777-12353877,12354022-12354220,12354720-12354845,
12354935-12355093,12356286-12356415,12356551-12356592,
12357507-12357806,12357933-12357984,12358157-12358234,
12359133-12359229
Length = 427
Score = 28.7 bits (61), Expect = 6.3
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +1
Query: 235 ETKQDP-ADSPVHHHRVATQSFLEMERGPAAEH-RPPSVAEKLMDHMADKFTDSESDADT 408
E ++D ADSP T S L+ME GP+A H + K D D F D + D
Sbjct: 267 EAEEDMFADSPKDK---TTASLLDMEPGPSAAHTSTTTTTSKEDDSDFDMFGDDDDKTDV 323
Query: 409 AGES 420
+S
Sbjct: 324 KRDS 327
>01_06_0238 - 27774546-27775418
Length = 290
Score = 28.3 bits (60), Expect = 8.3
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Frame = +3
Query: 420 APPSARAEGRTPEA*R--SDTGTTDA*SSRPDT----GAGPRARSACXRETCGAQSGARP 581
APP + +T EA D A + PDT A A + C R+ SGAR
Sbjct: 181 APPPTATKSKTEEATPPPDDVKPVVAAAQTPDTKILRAAKEAAATGCKRKADVKSSGARR 240
Query: 582 SSLSLSRCR 608
SRCR
Sbjct: 241 GKRLCSRCR 249
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,481,773
Number of Sequences: 37544
Number of extensions: 483518
Number of successful extensions: 1761
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1732
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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