Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_L24
         (842 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82059-12|CAB04880.1|  622|Caenorhabditis elegans Hypothetical p...    29   4.1  
U20783-1|AAC46845.1|  535|Caenorhabditis elegans unknown protein.      29   4.1  
AL032665-2|CAA21772.1|  622|Caenorhabditis elegans Hypothetical ...    29   4.1  
AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    28   7.2  

>Z82059-12|CAB04880.1|  622|Caenorhabditis elegans Hypothetical
           protein T27E9.7 protein.
          Length = 622

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
 Frame = +1

Query: 28  NXRGKKTLLEL-----DSSSGIVRRHXRCXISGRSFRAIVAEKPL-LSLFHYLL 171
           N  GK TLL+L       + G++RRH  C I GR  + +  E PL LS   +++
Sbjct: 430 NGAGKSTLLKLLCTDVMPTDGLIRRHSHCKI-GRYHQHLHEELPLDLSALEFMM 482


>U20783-1|AAC46845.1|  535|Caenorhabditis elegans unknown protein.
          Length = 535

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
 Frame = +1

Query: 28  NXRGKKTLLEL-----DSSSGIVRRHXRCXISGRSFRAIVAEKPL-LSLFHYLL 171
           N  GK TLL+L       + G++RRH  C I GR  + +  E PL LS   +++
Sbjct: 429 NGAGKSTLLKLLCTDVMPTDGLIRRHSHCKI-GRYHQHLHEELPLDLSALEFMM 481


>AL032665-2|CAA21772.1|  622|Caenorhabditis elegans Hypothetical
           protein T27E9.7 protein.
          Length = 622

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
 Frame = +1

Query: 28  NXRGKKTLLEL-----DSSSGIVRRHXRCXISGRSFRAIVAEKPL-LSLFHYLL 171
           N  GK TLL+L       + G++RRH  C I GR  + +  E PL LS   +++
Sbjct: 430 NGAGKSTLLKLLCTDVMPTDGLIRRHSHCKI-GRYHQHLHEELPLDLSALEFMM 482


>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = -2

Query: 232 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLXY 98
           +GT+ +   DIID   +P N +S++ +  +++  R  ET++H+ +
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIF 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,339,897
Number of Sequences: 27780
Number of extensions: 372782
Number of successful extensions: 925
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)