Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_L23
         (854 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    29   0.055
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    29   0.055
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.89 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   2.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.3  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   6.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   6.3  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 29.1 bits (62), Expect = 0.055
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 147 LISDAHEWINEIPTFARSSLKNHYFHCFI 233
           L SD ++++N     A   L+N Y+ CFI
Sbjct: 22  LYSDKYDYVNIDEILANDRLRNQYYDCFI 50


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 29.1 bits (62), Expect = 0.055
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 147 LISDAHEWINEIPTFARSSLKNHYFHCFI 233
           L SD ++++N     A   L+N Y+ CFI
Sbjct: 22  LYSDKYDYVNIDEILANDRLRNQYYDCFI 50


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +3

Query: 30  RNVISCPAALNVNVKKFKQARVNGGSNYDSLKVAKCLAHLISDAHEWINEIPTFARSSLK 209
           R V +    +  N  +  +A  + GS+    ++ +CL H I +AH  I       R+SLK
Sbjct: 115 RPVCASNGKIYANHCELHRAACHSGSSLTKSRLMRCLHHDIENAH--IRRTLHMNRTSLK 172


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -3

Query: 480 CPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEPDHAG 349
           C  +P   S+ + L+   +  +  +   Q NSP  +   P H+G
Sbjct: 30  CTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSG 73


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 198 SSLKNHYFHCFITYSVGRK 254
           SS    +FHC+     GRK
Sbjct: 420 SSFFQQFFHCYCPVRFGRK 438


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -1

Query: 776 QAISRGKXNXFXDGXNPAHVPF*WVNNPTXG 684
           Q    GK N      +PA  PF W ++ + G
Sbjct: 399 QGCGAGKENYQTMSRDPARTPFQWDDSVSAG 429


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -1

Query: 776 QAISRGKXNXFXDGXNPAHVPF*WVNNPTXG 684
           Q    GK N      +PA  PF W ++ + G
Sbjct: 399 QGCGAGKENYQTMSRDPARTPFQWDDSVSAG 429


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,697
Number of Sequences: 438
Number of extensions: 4389
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)