Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_L21
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...   138   7e-34
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar...    38   0.001
SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.6  

>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score =  138 bits (335), Expect = 7e-34
 Identities = 68/148 (45%), Positives = 94/148 (63%)
 Frame = +3

Query: 375 EQTVPPTIPVXELFPDGNFPEGQIMDHGPAEGIDERTAKNRFTSEEKXALDXLHKDIYQE 554
           EQT PPT+ + ++F +  +P G++ D+  AE    RT     T EEK ALD  + D Y +
Sbjct: 64  EQTNPPTVGLSKIFVNKKYPVGEVCDY--AEDNLWRT-----TDEEKRALDRQNFDQYND 116

Query: 555 IRHAAEAHRQTXKHIRNWIKPGMTMIXICEELXNTAXRLIGEDGLKAGLAFPTGCSRNHC 734
           +R AAE HRQ  ++ ++ IKPGM+M+ +   + NT   L+ EDGLK+G+ FPTG S NHC
Sbjct: 117 LRRAAEVHRQARQYAQSVIKPGMSMMDVVNTIENTTRALVEEDGLKSGIGFPTGVSLNHC 176

Query: 735 AXHYTPNTGDTTXLXYDDVLXIDFGTXI 818
           A HYTPN GDTT L   DV+ +D G  +
Sbjct: 177 AAHYTPNAGDTTILKEKDVMKVDIGVHV 204


>SPAC23H4.09 |cdb4||curved DNA-binding protein
           Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
 Frame = +3

Query: 501 TSEEKXALDXLHKDIYQEIRHAAEAHRQTXKHIRNWIKPGMTMIXIC---EELXNTAXRL 671
           TSE        + +   + + A E  +   K +    +PG  +  IC   +EL N A + 
Sbjct: 7   TSETAVDYSLSNPETVNKYKIAGEVSQNVIKKVVELCQPGAKIYDICVRGDELLNEAIKK 66

Query: 672 I--GEDGLKAGLAFPTGCSRNHCAXHYTPNTGD---TTXLXYDDVLXIDFGTXI 818
           +   +D  K G+AFPT  S N  A H +P   D      L   DV+ I  G  I
Sbjct: 67  VYRTKDAYK-GIAFPTAVSPNDMAAHLSPLKSDPEANLALKSGDVVKILLGAHI 119


>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 237

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -1

Query: 710 GESQTCFEPIFTNKTXRSVX*LFTNXYHSHARL 612
           GE+    E IFT+ T  SV  LF    H  A L
Sbjct: 108 GEASVSLEDIFTHGTVESVIPLFMKKRHPEAYL 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,904
Number of Sequences: 5004
Number of extensions: 41861
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)